Streptomyces viridosporus: CP969_29140
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Entry
CP969_29140 CDS
T07568
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
svd
Streptomyces viridosporus
Brite
KEGG Orthology (KO) [BR:
svd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
svd03016
]
CP969_29140
Enzymes [BR:
svd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CP969_29140
Transfer RNA biogenesis [BR:
svd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CP969_29140
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QEU88304
LinkDB
All DBs
Position
complement(6315944..6317242)
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AA seq
432 aa
AA seq
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MTDAHDTAADSSLRTTGGAPPDDDGSSATEAPIPLLEPHEGIPPVIADEAALAEVIAAFA
AGTGPVAVDAERASGYRYGQRAYLVQLRRQGAGTALIDPVACPDLSALGEALSGVEWVLH
AATQDLPCLREIGMLPTRLFDTELAGRLAGFPRVGLGAMVENVLGYVLEKGHSAVDWSTR
PLPEPWLRYAALDVELLVDLRNALEKELDRQGKLEWARQEFDAIASAPPPEPRKDPWRRT
SGMHKVRRRRQMAVVRELWQTRDRIARRRDLSPGKVLPDAAIVEAALALPADARALAALN
GFGQRAGRRQLEQWQAAVDRAKALSESQLPQPGQPVTGPPPPRAWADKDPVAAARLSAAR
AGVAALAERLNMPPENLIAPDTVRRVCWEPPQPADARSVAAVLTEYGARAWQVEQVTPVL
VTALASGADQGA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacgcccacgacaccgcagcagacagttcactgcgaaccaccggaggcgcccct
ccggacgacgacggatcttctgctacggaggcgccgatccccttgctcgaaccgcacgag
ggcattccgcccgtgatcgcggacgaggccgccctggccgaggtgatcgccgccttcgcc
gcgggcaccggccccgtcgccgtggacgccgaacgcgcctccggctaccgctacggccag
cgcgcctacctcgtccagctgcgccgccagggcgccgggaccgcgctgatcgaccccgtc
gcctgccccgacctgtccgccctgggcgaggcgctctccggcgtcgagtgggtgctgcac
gccgccacccaggacctgccctgcctgcgcgagataggcatgctgcccacccgcctcttc
gacaccgagctcgccgggcgcctggccgggttcccccgggtcggcctcggcgcgatggtc
gagaacgtgctcggctacgtgctggagaagggccactccgccgtcgactggtccacccgc
ccgctgcccgagccctggctgcgctacgccgccctcgacgtcgagctcctggtcgacctg
cggaacgcgctggagaaggagctggaccggcagggcaagctggagtgggcccggcaggag
ttcgacgcgatcgcctcggcaccgccgccggagccccgcaaggacccctggcggcgcacc
tccggcatgcacaaggtgcgccggcgccggcagatggccgtcgtccgggagctgtggcag
acccgcgaccggatcgcccggcgccgtgacctctcccccggcaaggtgctcccggacgcg
gccatcgtggaggccgcgctcgccctgccggccgacgcccgggccctggccgcgctgaac
gggttcgggcagcgcgcggggcggcgccagctggagcagtggcaggcggccgtcgaccgg
gccaaggcgctgagcgagtcccagctgccccagcccggccagccggtgaccggccccccg
ccgccgcgcgcgtgggccgacaaggacccggtggccgcggcccggctctccgcggcccgg
gcgggggtcgccgcgctcgccgaacggctgaacatgcctccggagaacctgatcgccccg
gacacggtgcgccgggtgtgctgggagccgccgcagccggccgacgcccggtcggtcgcc
gcggtgctgacggagtacggggcgcgggcctggcaggtggagcaggtgacgccggtgctg
gtcaccgcgctggcctccggcgccgaccagggggcctag
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