Streptomyces venezuelae: SVEN_4346
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Entry
SVEN_4346 CDS
T02274
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sve
Streptomyces venezuelae
Pathway
sve03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SVEN_4346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sve03021
]
SVEN_4346
03400 DNA repair and recombination proteins [BR:
sve03400
]
SVEN_4346
Enzymes [BR:
sve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SVEN_4346
Transcription machinery [BR:
sve03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SVEN_4346
DNA repair and recombination proteins [BR:
sve03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SVEN_4346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
HK97-gp10_like
Motif
Other DBs
NCBI-ProteinID:
CCA57632
UniProt:
F2RIS6
Structure
PDB
LinkDB
All DBs
Position
4703097..4706996
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDDERRTRDLPSLEAHVSVERQQIENRRDSDLEARAKKLEND
LGELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTANSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDTKGE
GRAFGSTAEAIMAFDAGELALQSQIDIRFPVGTVAPRGWVPPVTEEGEPEWQQGDSFRLR
TSLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFYWAT
RSGVTVAISDVVVPEAKKAIVKGYEEQDEKVQKQYERGLITKEERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLT
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIAERG
ADGVLRKTDDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVGAGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARQPKGVAPISEAAGRVRIEETEKTKKIVVTPDDGTDETAFPISKRARL
LVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVAEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGSGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggtctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcggtgtggcgtc
gaggtcacccgcgcgaaggtgcgccgtgagcggatgggccacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggcgttccgtcgcgcctcggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gacgagcgtcgtacgcgtgacctgccctcgctggaggcgcacgtctccgtcgagcgccag
cagatcgagaaccgtcgcgactccgacctggaggcccgcgccaagaagctcgagaacgac
ctcggcgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgcgcgcagcgcgagatcgaccgtctggac
gaggtctggtcgcgcttcaagaacctcaaggtccaggacctggagggcgacgagctcctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggttcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctggaggaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccgcgaacagccccaagggcatggttctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgtctgaagcgtctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggcggtcgacgcc
ctcttcgacaacggccgccgtggtcgcccggtcacgggccccggcaaccgtccgctgaag
tccctcagcgacatgctgaagggtaagcagggtcgtttccgtcagaacctgctcggcaag
cgtgtggactactccgcgcgttccgtcatcgtcgtcggtccgcagctgaagctgcaccag
tgcggcctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagcccgccgacggccgtccggtcacgatgccgacccaggac
atggtcctcggtctgttcttcctgaccaccgacggtgagctccgtgacaccaagggcgag
ggccgcgcgttcggctccacggccgaggcgatcatggcgttcgacgccggcgagctcgcg
ctgcagtcgcagatcgacatccgcttccccgtcggcaccgtcgctccccgtggctgggtt
cccccggtcaccgaggagggcgagccggagtggcagcagggtgactcgttccgcctgcgg
acgtcgctgggccgcgcgctcttcaacgagctgctgcccgaggactaccccttcgtcgac
tactccgtcggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggcttctactgggcgacc
cgttccggcgtcaccgtggccatctccgacgtcgtcgtgcccgaggccaagaaggccatc
gtcaagggctacgaggagcaggacgagaaggtccagaagcagtacgagcgcggtctcatc
acgaaggaagagcgcactcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgcgaacttcccgaagacgaaccccatcttcatgatggtcgactcg
ggtgcccgaggaaacatgatgcagatgcgtcagatcgcgggtatgcgtggtctggtgtcg
aacgccaagaacgagacgatcccgcgtcccatcaaggcgtccttccgtgagggcctcacc
gttctggagtacttcatctccacgcacggtgcccgtaagggtctggctgacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtgatc
atccgcgaggaggactgtggcaccgagcgcggtctgaagctgcggatcgccgagcgcggc
gccgacggtgtgctgcgcaagacggacgacgtcgagacctccgtgtacgcgcggatgctc
gccgaggacgtcgtcgtcgacggcaaggtcatcgcgccggccaacgtcgacctgggtgac
gtgctcatcgacgccctcgtgggcgccggtgtcgaggaggtcaagacccgctcggtcctg
acctgtgagtccgccgtcggtacctgtgcgttctgctacggccgttcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccgcgtgtcgtcgagctcttcgaggcgcgtcagcccaagggtgtcgccccg
atctcggaggcggccggccgcgtccgcatcgaggagaccgagaagaccaagaagatcgtc
gtcaccccggacgacggcaccgacgagacggcgttcccgatctcgaagcgtgcccgtctg
ctcgtgggcgagggcgaccacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctcggtcagcgtgcggtccaggtccacctggtcgccgag
gtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgtgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctcgccacc
gagtcgtggctgtcggcggcgtccttccaggagacgacccgagttctgacggatgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtcgagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggt
tcgggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
DBGET
integrated database retrieval system
