Streptomyces venezuelae: SVEN_5394
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Entry
SVEN_5394 CDS
T02274
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising, CPSF 100 kDa analog
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sve
Streptomyces venezuelae
Pathway
sve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVEN_5394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sve03019
]
SVEN_5394
Messenger RNA biogenesis [BR:
sve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SVEN_5394
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CCA58680
UniProt:
F2R6Q1
LinkDB
All DBs
Position
5838201..5839886
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPKGALRVIPLGGLGEIGRNMTVFEFDGRLLIVDCGVLFPEEEQPGV
DLILPDFTIIRDRLDDIEGIVLTHGHEDHIGAVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVKEGDRETLGAFDCEFIAVNHSIPDALAVAIRTPAGMAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPEKDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLRVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGIPKD
HIVIAEDGVVVDLVDGRARITGKVQAGYVYVDGLSVGDVTETSLKDRRILGEEGIISVFV
VVDSSTGKIVGGPHVHARGSGIDDAAFDAVLPKIDQALNKSFQDGVVEPHQLQQLIRRSV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcgccccgccgaagctgccgaagggcgccctgcgc
gtcatcccgctcggcgggctcggtgagatcggccggaacatgacggtcttcgagttcgac
ggccgcctgctgatcgtcgactgcggcgtcctcttccccgaagaggagcagcccggcgtc
gacctgatcctgccggacttcaccatcatccgggaccgcctcgacgacatcgagggcatc
gtgctcacgcacggccatgaggaccacatcggtgccgtcccctacctgctccggctcaag
ccggacatcccgctcatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccctacaccctcgaggtgaaggaaggcgaccgggagaccctgggc
gcgttcgactgcgagttcatcgcggtcaaccactccatcccggacgctctcgcggtcgcg
atccgcacccccgcgggcatggccgtcgccaccggcgacttcaagatggaccagctcccg
ctggacggccgcctcaccgacctccacgcgttcgcgcggctgagcgaggagggcatcgac
ctccttctctcggactccacgaacgccgaggtcccgggcttcgtcccgccggagaaggac
atctccaacgtcctgcgcacggtcttcgcgaacgcccagaagcgcatcatcgtggccagc
ttcgccagccacgtgcaccgcatccagcagatcctcgacgccgcccacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgcgacctgggc
tacctccgggtcccggccggcctcgtcgtggacgtgaagaccctcgacgacctgccggac
gacgaggtcgtgctcgtctgcaccggctcccagggcgagccgatggccgccctgtcccgc
atggccaaccgcgaccaccagatccggatcgtccccggtgacacggtcatcctggcctcg
tccctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgcgaacgtcgtccacaagggcaacgccaaggtccacgtctcgggtcacgcctcggcc
ggcgagctgctgtacttctacaacatctgccgcccgaagaacctcatgccggtccacggc
gaatggcgccacctgcgcgccaacgccgagctcggcgcgctgacgggtatccccaaggac
cacatcgtgatcgccgaggacggcgtcgtcgtcgacctcgtcgacggccgcgcccggatc
accggcaaggtccaggcgggttacgtgtacgtcgacggcctctcggtcggcgacgtcacc
gagacctcgctcaaggaccgccgcatcctgggcgaggagggcatcatctcggtcttcgtc
gtggtcgactcctcgaccggcaagatcgtgggtggcccgcacgtccacgcccggggctcc
ggcatcgacgacgccgcgttcgacgcggtgctcccgaagatcgaccaggcgctcaacaag
tcgttccaggacggcgtcgtcgaaccccaccagctccagcagctgatccgccgcagcgtc
ggtaagtgggtctccgacacctaccgccggcgtccgatgatcctcccggtcgtcgtcgag
gtctga
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