Streptomyces venezuelae: SVEN_5499
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Entry
SVEN_5499 CDS
T02274
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sve
Streptomyces venezuelae
Pathway
sve02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sve00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SVEN_5499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sve03021
]
SVEN_5499
Transcription machinery [BR:
sve03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SVEN_5499
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
CCA58785
UniProt:
F2R7X6
Structure
PDB
PDBj
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All DBs
Position
5971545..5973248
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AA seq
567 aa
AA seq
DB search
MTAEEGIQQPTEALCSSPVQPAPSAHSPSTVVGSSPIPGGAGSRFHRSERLFVSASTSRT
LPPEIAESESVMALIERGKADGQIAGDDVRRAFEADQIPPTQWKNVLRSLNQILEEEGVT
LMVSAAESPKRARKSVAAKSPAKRTATKTVTARTTVTKTTVTAAPASAAEDADPADEAGS
AAKKTAAKKTVAKKTVAKKTVAKKTAAKKTTSKKDADELVEGEELLEDVAPGKGEEEETE
GESKGFVLSDEDEDDAPAQQVAVAGATADPVKDYLKQIGKVPLLNAEQEVELAKRIEAGL
FAEDKLANSDKLAPKLKRELEIIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLI
QEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLAR
VQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIED
SEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRE
RIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
gtgacggccgaggaaggaatacagcagccgacggaggcgctgtgcagttccccggtccag
cccgcgccgtcggcacattccccgtcgacggtcgtcggctccagcccgatcccgggcggg
gccggaagccgtttccatcgttccgagaggttgttcgtgtcggccagcacatcccgtacg
ctcccgccggagatcgccgagtccgagtctgtgatggcgctcatcgagcggggaaaggct
gatgggcagatcgccggcgatgacgtgcgtcgggccttcgaggctgaccagattccgcca
acccagtggaagaatgttctgcgcagcctcaatcagatcctcgaggaagagggtgtgacg
ctgatggtcagtgcagcggagtcgccgaagcgcgcccgcaagagcgtcgcagcgaagagc
ccggccaagcgcaccgccaccaagaccgtcaccgccaggacgaccgtgacgaagacgacc
gtcacggccgcaccggcctccgcggccgaggacgcagacccggccgacgaggccggatcc
gccgccaagaagacggccgcgaagaagaccgtcgccaagaagacggtggccaagaagacc
gtcgccaagaagacggcggccaagaagaccacgtccaagaaggacgccgacgaactcgtc
gagggcgaagagctgctcgaggacgtcgcgcccggcaagggcgaggaagaagagaccgag
ggcgagagcaagggcttcgtcctgtccgacgaggacgaggacgacgctccggcgcagcag
gtcgccgtcgccggtgccaccgccgacccggtcaaggactacctgaagcagatcggcaag
gtcccgctgctcaacgccgagcaggaggtcgagctcgccaagcgcatcgaggccggtctg
ttcgccgaggacaagctcgccaactcggacaagctcgcgccgaagctcaagcgcgagctg
gagatcatcgccgaggacggccgccgcgccaagaaccacctcctggaggccaacctccgt
ctggtggtctccctggccaagcgctacaccggccgcggcatgctcttcctggacctgatc
caggagggcaacctgggtctgatccgcgcggtcgagaagttcgactacaccaagggctac
aagttctccacgtacgccacctggtggatccgtcaggcgatcacccgcgccatggcggac
caggcccgaaccatccgcatcccggtgcacatggtcgaggtcatcaacaagctcgcgcgt
gtgcagcgccagatgctccaggacctgggccgcgagcccaccccggaggagctggccaag
gagctcgacatgacccctgagaaggtcatcgaggtccagaagtacggccgtgagccgatc
tccctccacacccccctgggtgaggacggcgacagcgagttcggtgacctcatcgaggac
tccgaggcggtcgttccggccgacgcggtgagcttcacgctcctccaggagcagctgcac
tcggtgctcgacacgctctccgagcgtgaggccggcgtcgtctcgatgcgtttcggtctg
accgacggccagccgaagacgctggacgagatcggcaaggtctacggcgtgacccgcgag
cggatccgccagatcgagtcgaagacgatgtcgaagctgcgtcacccgtcgcgctcgcag
gtgctgcgcgactacctcgactga
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