Solanum verrucosum: 125807048
Help
Entry
125807048 CDS
T11474
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
sver Solanum verrucosum
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sver03021
]
125807048
03036 Chromosome and associated proteins [BR:
sver03036
]
125807048
Transcription machinery [BR:
sver03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
125807048
Chromosome and associated proteins [BR:
sver03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
125807048
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
HHH_3
OB_PDCD11
SH2
Tex_N
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
125807048
NCBI-ProteinID:
XP_049342761
LinkDB
All DBs
Position
Unknown
AA seq
1644 aa
AA seq
DB search
MAGKNVISDDEDEVGMEEEERDEEPVDGDGVDEREDEDEDEEEEEGQDEYEKDGFIVDDV
EEEEDEDEDDRADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRPKLESKKF
KRLKKAQRDMEDEGTGFYEEEEFDGTGRRGRTAEQKLERSLFGDDEGQPLEDIAEEEERL
EEEEDADIGEEDEMADFIVDEEEVDEHGAPIRRKKVNKKKSRQAAGVSSSALQEAHDIFG
DVDELLMRRKQDRAKSSMHDESGEWSERRLEDEFDPTILAEKYMTEKDEHIRKIDVPERM
QISEESTGPVPPETISVEESNWIYNQLAAGVVPLFKKKDSGKDSGTTDEEKELPIDKDDI
MRFLDLMHAQKLDVPFIAMYRKEECMSLFKDPEEDGTSDDGPKNSDKKPAVRWHKVLWAI
QDLDRKWLLLQKRKSALELYYKKRFQEESRRVYDETRLKLNQQLFESITNSLQASESERE
VDDVDSKFNLHFPPGEVGVDEGQYKRPKRKSQYSICSKSGLWEVASKLGYSAEQFGRHMS
LEKMGDELEDAREPPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVRKHVRTTYM
THAVVSTSPTPEGNTVIDSFHRYAGVKWLRDKPLSEFVDAQWLLIQKAEEEKLLQVTIKL
PEVHLNQLTTDSKEHYLSDGVSKSAQLWNEQRKLILEDAIFNFLLPSMEKEARSLLTSKA
KNCLLMEYGNVLWNKVSVGPYQRRENDLGSDEEPAPRVMACCWGHGKPATTFVMLDSSGE
VLDILYAGSLSLRGQNVNDEQRKKNDQQRLLKFMMDHQPHVVVLGAVNLSCTRLKEDIYE
IIFKMVEDNPRDVGHEMDNLNIIYGDESLPHLYENSRISADQLPTQSGIVRRAVALGRYL
QNPLAMVATLCGPGREILSWKLNTLESFLTPDEKYEVVEQVMVDVTNQVGVDLNLAISHE
WLFAPLQFISGLGPRKAASLQRSLVRQQTIFTRKDLLTEHHLGKKVFVNAVGFLRVRRSG
YTANSNTYIDLLDDTRIHPESYSLAQELAKDIYLKDMGEENNDDDEVLEMAIEHVKEKPH
LLRLVNAYEYAEDKNRFNKRETLNGIKLELMQGFQDWRRQYVEPSQDEEFYMISGESEET
LSEGRIVQATVRRVQPQKAICSLECGLTGILSKEDSSDDWRDVNDLTEKMREGDILTCRI
KSIQKNRYQVFLSCKENDMRNNRYQNNQNLDPYYHEDRTSLQTEKEKARKEKEIAKKHFK
PRMIVHPRFKNITADEAMEFLSDKEPGESIVRPSSRGPSYLTLTLKVYDGVYAHKDIVEG
GKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLSYRKFKTGTKAEVD
ELLKIEKSEYPMRIVYSFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEDI
DRLVAYFQRHIDDPHDSGPSIRSVAAMVPMRSPASGGSSGFGGGWGGSSNDSGRRGGQSG
DRDRSSGSGSRPGRNDYRNRSNQDDQSGLPPRPYGGGGRGRGRGRGRGRGNNDNDGQDSD
YGSQKWSSKEGGGGGWGEVQNSPARESWGGGGGSGAGGGSGDGGGWGASPSGGGGGDSWG
KDTGGEAEDSGWGGGKKSGGSGGW
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaacgtgatctccgatgacgaagatgaagtcggaatggaggaagaggag
agggatgaagagccagttgatggtgatggagtggatgagcgggaggatgaggatgaagac
gaggaagaagaagaaggtcaggatgaatacgagaaagatggatttatagtggatgatgta
gaggaagaagaggatgaggatgaagatgatagagctgacagcgatgatgagaggcaaaag
aagaagaaaaggaagaaaagggagtcagagaggaattacgtgcttgatgaagatgattat
gaacttctacaggaaagcaatattgcggtgcctcgtccaaaacttgagagcaaaaagttc
aagcggctaaaaaaagctcagagggatatggaggatgagggtactggtttttatgaggag
gaggagtttgacggaactgggagacgagggcgtacagctgagcagaagctcgagcgtagc
ttatttggtgatgatgaagggcaaccactcgaggatattgctgaggaggaagaaaggctg
gaggaagaagaggatgctgacattggtgaggaagatgaaatggcagactttattgttgat
gaagaagaagttgatgaacatggtgctcctattagaaggaagaaggtaaacaaaaagaag
tccaggcaggcagcaggagtttcgtcctctgctctccaggaagcccatgacatatttggt
gatgttgacgaacttttaatgcgtcgaaaacaagatcgggccaaatcgagcatgcatgat
gaatccggtgaatggagtgaaaggagacttgaagacgaatttgatcctactattctagct
gagaaatatatgactgagaaggatgagcacattcggaaaatagatgtccctgaaagaatg
cagatatccgaggagagcactggtcctgtgccacctgaaaccatcagtgtggaagagagc
aactggatctacaatcagcttgctgctggtgttgtgcctctttttaagaagaaagatagt
gggaaagatagtggtacaactgatgaagagaaagagctaccaatagataaagatgacatt
atgagatttctggatttgatgcacgcgcagaagcttgatgtcccgttcattgccatgtac
cgtaaggaggaatgcatgagcttatttaaggacccagaagaggatggaactagtgatgat
ggccctaaaaattctgacaaaaaacctgcagtaagatggcataaggtgctttgggcaatc
caagatttagacagaaagtggctcctccttcagaagcggaagtctgcacttgagttgtac
tataagaagcgttttcaagaagagtcccgtagggtgtatgatgaaacgcgtctaaagctg
aatcagcagctctttgaatcaattactaattcactccaggcgtctgagtctgaaagagag
gttgacgatgttgactcaaaatttaacttgcacttcccacctggagaggtcggtgtggat
gaaggacaatataagaggccaaagaggaaatcacaatacagtatttgcagcaaatccggc
ttatgggaagtggcgagcaagttgggatacagcgctgagcaatttggtagacatatgtct
ctagaaaagatgggggatgagctggaggatgctagggaaccaccagaagagatggcatcg
aacttcacctgtgcaatgtttgaaacacctcaagctgtgcttaaaggcgctagacacatg
gcagcagtcgagataagctgtgaaccaagtgtccgtaaacatgtgcgtactacctatatg
acccacgctgtagtatcaacgagtccaactcctgaggggaatacagtgattgattccttc
catcgatatgctggagtcaagtggttacgggataaacctctctccgaatttgtggatgca
cagtggcttctcatccagaaggctgaagaggagaaactcctccaagttactatcaagctg
cctgaagttcatcttaaccagctgacaactgactcgaaagagcattatctcagtgacggt
gtgagtaaatctgctcagttatggaacgaacagagaaagttaatacttgaggatgcaatc
ttcaattttcttctgccttcaatggaaaaggaagcaagatccttgctaacaagtaaagca
aaaaactgtcttcttatggaatatggtaatgttttgtggaataaagtgtcagttggacca
tatcaacgcagagagaatgatcttggctctgatgaagagcctgcacccagggttatggct
tgctgttggggccatggtaagccagcaaccacttttgtgatgttggattcgtcgggagag
gttttggatattctgtatgctggatctcttagccttcgtggccagaatgttaatgatgag
cagcggaagaagaatgaccagcagagactgttaaaattcatgatggaccaccaaccacat
gttgtagtgctgggagctgtaaatctgtcttgtacacggcttaaggaggatatttatgag
attattttcaagatggtggaggataatccaagagatgttggtcatgagatggataatctg
aacataatatacggagacgaatcccttccgcatctctatgagaattcccgcatttctgcc
gaccagcttcctacgcagtcaggtattgtgaggcgcgctgtggcattgggacgttatctt
caaaatcctttagcaatggtagcaacattatgtggaccagggagggaaattttatcttgg
aagctgaatactttagagagctttctcacaccagacgagaagtatgaggtggttgaacag
gttatggtggatgtaactaaccaggtgggtgttgatcttaatttggctataagtcatgaa
tggctatttgccccgctgcaatttatttcggggctgggtcccagaaaggcggcatctctt
caaagatccttggtaagacagcagacaatcttcacgaggaaggatctcttaactgaacat
catcttggtaaaaaggtatttgttaatgcagttggcttcttgcgagtacggcgcagtgga
tacactgcaaatagcaatacatatattgatttgttagatgatacaaggatccatccagaa
tcctatagtcttgcacaggagttggcaaaagatatttatcttaaagacatgggtgaagaa
aataatgatgatgatgaagtgcttgaaatggcaatagagcatgttaaagagaagccacat
ttgttgaggttggttaatgcttatgaatatgctgaagataagaatcgttttaataaaagg
gaaacccttaatggtataaagttggagctaatgcaagggtttcaagattggcgtagacag
tatgtggagccaagccaggatgaagagttctatatgatttctggtgagtctgaggagacg
ctttctgagggaagaatcgtgcaggcaacagttcgtcgggttcaacctcagaaagctatc
tgttctctcgagtgtggattgactggtattctttccaaggaagattcttcagatgattgg
agagatgtcaatgatttgactgaaaaaatgcgtgaaggtgatatcttaacttgcagaatc
aagtcgatccaaaaaaataggtaccaggttttcctgagttgtaaagagaatgatatgaga
aataataggtatcagaataatcagaacttggatccatactaccatgaagatcgcactagc
ttacagactgagaaggaaaaagctcgtaaagaaaaggagattgcaaagaagcatttcaag
ccaaggatgatagttcatcctcgattcaaaaatataacagccgatgaagctatggagttc
ctctctgacaaggaaccgggtgaaagcattgtacgtcccagctcacgtggaccatcatat
ttgactttaactctcaaagtgtatgatggagtttatgctcacaaggatattgtggaaggt
ggaaaggaacataaggatataacaagcttgctgcgcatcgggaaaacactgaaaatagga
gaggatacttttgaagatttagatgaggtaatggatcggtatgttgatccattggtagct
catttgaaggcaatgctaagttaccgtaagtttaagacgggaacaaaggcagaagttgat
gagcttttgaaaattgagaaatctgagtaccctatgaggattgtctatagctttggtatt
tctcatgaacaccctgggacattcattttgacttatatacgaagttccaacccacaccat
gagtatgttggtttgtacccgaaaggatttaaattccgcaagaggatgtttgaagatatt
gatcgccttgtggcatattttcaaaggcatattgatgatccccatgactctggaccatca
atacgatcagttgcagcaatggtgcctatgcgcagccctgcaagtgggggctcctcagga
tttggtggcgggtggggtggttcatccaatgatagtggtcgaagaggtggtcagtctggg
gacagagataggtcttccggttcaggttctagaccaggtagaaatgactacagaaatcga
agcaatcaggatgatcaaagtggattgccaccaaggccctacggtggtggtggtcgtgga
cgtggtcgtggtcggggacgtggtagaggaaataatgataatgacggacaggattcagat
tatggctctcaaaagtggagttctaaggaaggtggaggaggaggttggggtgaagttcaa
aattcacctgccagagagtcttggggtggtggtggaggaagtggtgctggaggtggtagt
ggagacggaggtggttggggtgctagccctagtggcggcggcggtggggacagctggggg
aaggacactggtggtgaggccgaggattctggctggggtggcggtaaaaagtctggtggc
agcggagggtggtga
DBGET
integrated database retrieval system
