Solanum verrucosum: 125807448
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Entry
125807448 CDS
T11474
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125807448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125807448
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125807448
mRNA degradation factors
5'-3' decay
Decapping complex
125807448
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DCP1
CD1375-like
Motif
Other DBs
NCBI-GeneID:
125807448
NCBI-ProteinID:
XP_049343123
LinkDB
All DBs
Position
Unknown
AA seq
373 aa
AA seq
DB search
MSQNTKLMPNLDQNSTKLLNLTVLQRIDPFIEEILITAAHVTLYEFSIDNSQWSRKDIEG
SLFVVKSGSYRSSQPRFQFIVMNRRNTDNLVEDLLGDFEYEIQLPYLLYRNASQEVNGIW
FYNQRECEEVANLFDRILGAYSKVPTKSKVPLTKSEFEELEAVPTMAVIDGPLEPSSSTA
SNAPHLPEDNSFVNFFSNAMTIGNASSTAVQGQLYHSSPATLPPPRPPASVPSSSAPVLL
PSPPLSASSLLRPLHDAPELDVSAKWSSNLVKPSSFFGPPPASSPLMPPISSSVPTAPPL
LPLGNLQRPYGAPLLQPFPPPTPPPSLTPTSSSIPNNIPVVSRDKVREALVMLVQDDQFI
DMVYRALLNAHHS
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaaacacgaaattgatgccgaatctggaccagaacagcacgaagctgctaaac
ttgacggttcttcagaggattgatcctttcattgaagaaatcctcatcactgctgctcat
gttaccttgtacgaattcagtattgataacagccaatggagtcggaaggatatcgaagga
tctctatttgttgtcaagagcgggtcttacaggagttctcaacctcggtttcagtttatt
gttatgaaccgcagaaatacagataatttggtggaggatctgttgggagattttgaatat
gagatccagcttccatatttgttgtatcgaaatgcttcccaagaagttaacgggatatgg
ttttataatcagcgtgaatgtgaagaagttgcaaatctctttgacaggatactcggtgca
tattccaaggtgcctaccaagtcaaaagtgccattgacgaagagtgaatttgaagagctg
gaagcagttccaaccatggctgtaattgatggtcctctggagccttcatcgtctactgcg
tcaaatgctccacatctccctgaggacaattcctttgtgaacttcttcagtaatgcaatg
acaattgggaatgcttctagtactgcagttcaagggcagctataccactcatctccagct
accctacctccccctcgtcctcctgcttctgttccttcgtcttcagcaccagtcctgctt
ccatctcctcctctttcagcttcttcccttttgaggcccctccatgatgcacctgaacta
gacgtcagtgctaaatggtcttcaaatctggtgaagccatcatctttttttggtcctcca
cctgcctcctctccgctgatgcctcccatttcttcatcagtgcccactgctcctccactt
cttccacttgggaatcttcagcgcccttatggagctcctttgcttcaaccatttcctccg
cccactcctcctccttctctcactcctacttcttcttccatcccaaacaatattcctgtt
gttagcagagataaagtgcgggaagcacttgtaatgcttgttcaggatgaccaattcata
gacatggtataccgggcactgctgaatgcacatcattcataa
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