Solanum verrucosum: 125807554
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Entry
125807554 CDS
T11474
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125807554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125807554
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125807554
Spliceosome [BR:
sver03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125807554
Complex C
U5 SnRNP specific factors
125807554
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
DUF7863
Motif
Other DBs
NCBI-GeneID:
125807554
NCBI-ProteinID:
XP_049343240
LinkDB
All DBs
Position
Unknown
AA seq
2174 aa
AA seq
DB search
MSNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPSGEPESLYGKIDPKSFGDRAY
KGRPPELDEKLQKARKKKEREPLVSEPTRQSKKRRLQEESVLTSSEEGVYQPKTKETRAA
YEAMLSLIQQQLGGQPLNIVSGAADEMLAVLKNDNFKNPEKKKEIEKLLNPISNQVFDQL
VSIGRLITDYQDGGDASASAAADGDDGLDDDVGVAVEFEENEEEEEESDLDVVPDDEEED
DDVMEASASGAMQMGSGIDDDEMREADEGMALNVQDIDAYWLQRKISQAYEQQIDPQQSQ
KLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKYLLRNRLKVVWCTRLARAEDQENRK
KIEEEMLGLGPDHVAILEQLHATRATAKERQKNLEKSIREEARRLKDESGVDGDGERKAL
VDRDLDNGWLMGQRQFLDLDSLAFQQGGLLMANKKCELPVGSYRNHKKGYEEVHVPALKP
RPLDPGEELVKISSIPEWARPAFSGMTQLNRVQSKVYETALFSPENILLCAPTGAGKTNV
AMLTILQQIALNRNEDDGTFNHNNYKIVYVAPMKALVAEVVGNLSKRLEHYGVTVKELSG
DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
IARTIRQIETTKEHIRLVGLSATLPNYEDVAVFLRVDLKKGLFHFDNSYRPVPLAQQYIG
ITVKKPLQRFQLMNDVCYEKVISIAGKHQVLIFVHSRKETSKTARAIRDTALANDTLGKF
LKEDSLTRELLQSQTELVKSNDLKDLLPYGFAIHHAGMVRTDRQLVEDLFADGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIILT
GHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVLNAKEACKWLLYTYLYVRMVR
NPTLYGLPADALKTDYALEERRADLVHSAAILLDKNNLVKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKES
LEEPSAKINVLLQAYISRLKLEGLSLSSDMVYITQSAARLMRALFEIVLKRGWAQLAEKA
LKWCKMISKRMWSVQTPLRQFHGIPNEILMKLEKKDLAWERYYDLSSQELGELIRFPKMG
RTLHKFIHQFPKLNLAAHVQPITRSVLRVELTITPDFQWEDKIHGYVEPFWIIVEDNDGE
FILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPAYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAAPT
GSGKTICAEFAILRNHQKGPDSTIRAVYIAPLEALAKERFNDWKTKFGDHLGMRVVELTG
ETASDLKLLEKGQLIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPILEVI
VSRMRYISSQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV
DIANFEARMQAMTKPTYTAIVQHARKGKPALVYVPTRKHARLTAVDLMTYSSMDSEDTPI
FLLRSAEELEPFVERINEPMLQETLKYGVGYLHEGLSATDQDIVKTLFETGWIQVCVMNG
TMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLVDSSGKCVILCHA
PRKDYYKKFLYEAFPVESHLQHYLHDNLNAEVVVGVIQNKQDAVDYLTWTFMYRRLTQNP
NYYNLQGVSHRHLSDQLSELVENTISDLEASKCVTVEDEFLLSPLNLGMIASYYYISYTT
IERFSSSVTSKTKLKGLLEILASASEFEQLPIRPGEEELIRRLINHLRFSFENPKYTDPH
VKANALLQAHFSRQMVGGNLASDQQEVLLSATRLLQAMVDVISSNGWLSLALLTMEVSQM
VTQGMWERDSMLLQLPHFTKELAKKCQENPGRSIETVFDLVEMEDDERRELLQMSDLQLL
DIARFCNRFPNIDLTYDVLDSDNVSAGDDVSVQVTLERDLEGRTEVGPVFAPRYPKTKEE
GWWLVVGDTKSNQLLAIKRVTLQRKSKVKLDFAAPAEAGTRNYTLYFMCDSYLGCDQEYN
FTLDVKEAMAEDDS
NT seq
6525 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatttgggcggtggggcagaagcacatgcacgtttcaaacagtatgagtacaga
gcgaactcaagtcttgttctaactactgattctcgtccccgagatactcatgaaccctct
ggtgaacctgagtctctttatggaaaaattgaccctaaatcatttggtgatcgagcttac
aagggtagacctccagagttggatgagaaacttcagaaggctaggaagaagaaggagcgg
gaaccacttgtctctgagcccactaggcagagtaagaagagacggcttcaggaagaaagt
gttcttacttcgagtgaggaaggtgtttaccagcctaaaacaaaggaaactagggctgct
tatgaggctatgctcagtttgattcagcagcaacttgggggacagcctctcaacattgtg
agtggagcagctgatgagatgttggcggtgttgaaaaatgataacttcaagaaccctgaa
aagaaaaaggaaattgagaagctgttaaatcctatatcgaatcaggtgtttgatcagttg
gtgtcaattgggcgactcattactgactatcaggatggtggcgatgcatcagcgtctgct
gcagctgacggcgatgatggtcttgacgatgatgtcggtgtagcagttgagtttgaggag
aatgaagaagaagaagaagagagtgatcttgatgtggtacctgatgatgaagaggaggat
gatgatgtgatggaagccagtgcttctggtgctatgcagatgggcagtggcattgatgat
gatgagatgcgggaggccgatgagggaatggccttgaatgttcaggacatagatgcttat
tggcttcaaagaaagatctctcaagcttatgagcagcagatcgatccccaacagagccaa
aagcttgctgaagaggttcttaaaattcttgctgaaggcgatgatcgtgaagtagaaaca
aagctgctggtgcatctccaatttgataagtttagtctcatcaaatatcttctgcgcaac
cggctaaaggtagtatggtgtacccgccttgcaagggctgaagaccaagagaataggaag
aaaatcgaagaagagatgttggggttggggccagatcatgtggctatattagaacagttg
catgctactagggctactgcaaaagagaggcagaagaatctggagaaaagcattagggaa
gaggctaggcgtcttaaagatgagtctggtgttgatggtgatggagaaaggaaggcactt
gtagatagagatcttgataatggttggttaatggggcagcgtcagtttcttgatcttgac
agccttgcatttcagcaaggcggtttgttgatggcaaataagaaatgtgagcttccagtg
gggtcttacaggaatcataagaaggggtacgaggaagttcacgtgccagcattgaagcca
aggccactagaccctggtgaagagcttgtgaagatatcctccattccagagtgggctcga
ccagcattcagtgggatgacccaattgaacagggtgcagagtaaagtatatgagactgcc
cttttttctccggagaacattttgctctgtgctccaactggtgccgggaagaccaatgta
gctatgctcactatacttcagcaaattgcactaaaccgcaatgaagatgatggtacattc
aaccacaacaactataagatcgtatatgtggcacccatgaaagcccttgttgctgaagtg
gttggtaatctctccaagcgtttggaacattatggtgtcacagtgaaagagttgagtggt
gatcaaacattaactcgtcaacagattgaagagactcaaattatcgtgactaccccagag
aagtgggatattataaccagaaagtcgggcgatcgcacatatacacagcttgttaaactt
cttattattgatgagattcatctcctgcatgacaacagaggtcctgtcttggagagtatc
attgctagaactattcgacagatcgaaaccaccaaagagcatattcgtcttgttggattg
tcagcaactcttccaaattatgaagacgtggctgtgtttttgcgagtggatctgaagaaa
ggactcttccattttgacaatagctataggcctgttccgttggctcagcagtatattgga
attacagttaagaagccactgcagagattccagttgatgaatgacgtttgctatgagaag
gtgattagtattgcaggaaagcatcaggtgcttatttttgtccattcaaggaaggaaaca
tctaaaacagctcgtgcgatacgggatactgcacttgctaatgacacccttggtaagttt
ttgaaggaggacagtttaactcgggaacttctacagtcgcaaactgagcttgtgaagagc
aatgatctcaaagatcttttaccatatggttttgctattcatcatgcggggatggttaga
actgatcggcaacttgtggaggatctttttgctgatggccatgtgcaagtgttggtttca
acagccactttagcatggggtgtcaatttacctgcacatactgtgattataaaaggtacc
cagatttacaatcctgagaaaggagcatggactgaactcagtcctcttgatgttatgcaa
atgcttggtcgcgctggacgtcctcagtatgacacctatggtgaaggaatcatattaacg
ggccacagcgaattgcaatattatttgtccctgatgaatcagcagctgccaatagaaagt
caatttatctccaagttggcagatcagttaaatgccgagattgtcctcgggactgtgttg
aatgccaaggaagcatgtaaatggctcctgtatacttacctctatgtccgcatggtacgg
aatcccacactttatggtctacctgctgatgctctcaagactgattatgctttggaggaa
aggcgtgctgacttggtacattctgctgctatattgctggacaagaataacttggtcaag
tatgacagaaaaagtggatatttccaggtgactgacctgggtcgcattgcgagttattat
tatataactcacgggacaatttccacgtacaatgagcatttgaagcctacgatgggtgac
attgaactttgcaggcttttctctcttagtgaggaattcaaatatgttacagtcagacaa
gatgagaaaatggaattggcgaagcttctagatcgtgttcctatcccaataaaagagagt
cttgaggaacctagtgccaagatcaatgtactattgcaggcatatatttcacggctgaag
cttgaagggttgtccctgtcatccgacatggtttatatcactcagagtgctgcacgtctg
atgcgagccctttttgagattgttctgaaaaggggatgggctcagttagctgagaaggcc
ttaaaatggtgcaaaatgataagcaaaaggatgtggagtgtacagacaccacttcgccaa
ttccatggcataccaaatgaaatcttgatgaagttggagaagaaagatttggcttgggag
cgttattatgatctttcatcacaagaattgggagagcttatccggttcccaaagatggga
aggacattacacaagttcattcatcagttcccaaagctgaaccttgctgcacatgttcaa
ccaattacgcggtcagtcttgagggttgaattgacaattacaccggatttccaatgggaa
gacaagattcatggttatgtagaacctttctggataattgttgaagataatgatggggag
tttattcttcatcatgaatatttcatgttgaagaagcagtatattgatgaggaccatact
ttgaacttcacagtcccaatatatgagccactgcccccacagtatttcattcgggttgtc
tctgacaaatggctagggtcccagactgttttacccgtctctttccgacatctgattttg
ccagagaaatatcctcctcccaccgagttactagacttgcaacctctgccagttactgca
ttgaggaatccagcatatgaagcactttatcaagatttcaagcatttcaatccggttcag
actcaggttttcacagtgctgtacaattcagatgacaatgtcttggttgcagctccaact
ggtagtgggaagactatttgtgctgaatttgccatattgaggaatcatcagaaaggacct
gatagtaccattcgtgctgtgtatatagctccactagaggctcttgctaaggagcggttc
aatgattggaaaacgaaatttggggaccatctgggaatgagggttgttgaattaactggg
gagaccgccagtgatctgaagctgttggagaagggtcaactaattatcagcacacctgag
aaatgggatgctttgtctcgtcgctggaaacaacgtaagcatgttcagcaagtcagtctt
ttcattattgatgaattgcacctgattgggggtcaaggtggcccaatcctggaggtgatc
gtctctcggatgagatatatctcaagccaggttgagaacaagatccgcatcgttgctttg
tcaacttccttagctaatgccaaggatttgggagaatggattggggctacatctcatggg
cttttcaactttccgcctggtgtaaggcctgtgccacttgaaatacacattcaaggtgtt
gatattgctaactttgaagctaggatgcaagccatgacaaaacccacatatactgcaata
gtccaacatgcaaggaagggtaaacctgcacttgtgtacgttcccacaaggaagcatgct
cgcttgactgctgtagatctgatgacttattcaagcatggacagcgaagacacacccata
tttctgctacgatctgcagaagagctggaacctttcgtggaaaggatcaatgaacctatg
ctgcaagagacactcaagtatggtgtgggctacttgcatgaggggttgagtgccactgat
caggatatagtgaagacattgtttgaaactggatggattcaagtgtgtgtgatgaacggt
acaatgtgttggggagtaccgttatctgcacatttggtggtggtcatggggactcagtat
tatgatggtagggaaaatgcacacactgattatcccgttactgatttgttgcagatgatg
ggccatgccagtcgacctcttgtagatagctcagggaagtgtgttatcctctgccatgca
ccacgcaaggattactacaagaagttcttgtatgaagcattcccagttgaaagccatctg
caacattatctccatgataatttgaatgctgaggtggtggttggcgttattcagaacaag
caggatgctgttgattaccttacatggaccttcatgtatagaaggctgacacagaatcca
aattactacaatctgcagggtgttagtcataggcatctgtctgaccaactgtcggagcta
gtggagaataccatcagtgatttggaggcaagtaaatgtgtcactgttgaggatgaattt
ttgctttcacctttgaatctcggtatgatagcgtcatattattatatcagttacaccaca
atagagcgttttagctcttctgtgacctccaagacaaagttgaagggcttgctggaaata
ttggcgtcagcatcggagtttgaacagctgccaatacgaccaggtgaagaggaattgata
agaaggttgattaatcatctgcgtttctcttttgagaatccaaaatacacagatcctcat
gtcaaggctaatgctcttttacaagcccatttctctaggcaaatggtgggtggaaatctt
gcttctgaccagcaagaggtgctgctttctgctactaggctgcttcaagcaatggttgat
gttatttccagtaatggttggcttagtctagcacttctaacaatggaggtgagccagatg
gtgacacaagggatgtgggaacgtgactcgatgcttctccagcttccacacttcacaaag
gaattggctaagaagtgccaagaaaatccagggaggagtatagagacagtgtttgatttg
gtggagatggaagatgatgagaggcgtgagctcttgcaaatgtcagacttgcagcttctg
gatattgcccggttctgtaaccggtttccaaacattgatttgacgtatgatgtgctggac
agtgataatgtgagtgctggagatgatgtaagtgtgcaggtaacccttgagcgagatctt
gaaggtagaacagaagttggacctgtttttgcacctagatatcccaaaaccaaagaggaa
ggatggtggcttgttgtcggggatacaaagagcaaccaattactggccattaagagagtc
accctccaaaggaaatctaaggtcaagctggattttgctgcccctgctgaagctggaaca
aggaactacacactctatttcatgtgcgattcttatctgggttgtgaccaggaatacaac
tttactcttgatgttaaagaggcaatggctgaagatgacagttga
DBGET
integrated database retrieval system
