Solanum verrucosum: 125808788
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Entry
125808788 CDS
T11474
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125808788
09123 Folding, sorting and degradation
03018 RNA degradation
125808788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125808788
03041 Spliceosome [BR:
sver03041
]
125808788
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125808788
mRNA degradation factors
5'-3' decay
Lsm complex
125808788
Spliceosome [BR:
sver03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125808788
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF7452
Ntox4
Motif
Other DBs
NCBI-GeneID:
125808788
NCBI-ProteinID:
XP_049344407
LinkDB
All DBs
Position
Unknown
AA seq
88 aa
AA seq
DB search
MSSNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG
RRITKLDQILLNGNHIAILVPGGSPPDE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgaacaacccttctcagcttcttccttctgagttgattgatcgttgcattggt
tcaaagatatgggtgataatgaagggtgataaggagcttgttggtacacttagaggattt
gatgtttatgttaacatggttcttgaagatgttactgaatatgagatcacttctgaaggg
cggaggataacaaaacttgatcagatattgctcaatggaaaccacattgctatcctggtt
ccaggtgggtcgccacctgatgaatga
DBGET
integrated database retrieval system