Solanum verrucosum: 125810326
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Entry
125810326 CDS
T11474
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC125810326
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125810326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125810326
03041 Spliceosome [BR:
sver03041
]
125810326
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125810326
Spliceosome [BR:
sver03041
]
Complex B
Other components
Prp19-related factors
125810326
Complex C
125810326
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
zf-A20
TPR_15
ARM_TT21_C
TPR_19
Motif
Other DBs
NCBI-GeneID:
125810326
NCBI-ProteinID:
XP_049345789
LinkDB
All DBs
Position
Unknown
AA seq
967 aa
AA seq
DB search
MEQNDTGCQAPVLCVNNCGFFGTAATMTMYSKCYKDMIFKQEQANFAASSIENFVNGSSS
ACVKAVDVAVTVQEGPAESLVIPTQVAAPVESVQVEKAKEGPNRCTTCRRRVGLQALPGS
NKIWHAYLRECLELVRNLPINHSLYQALNNTFERALVTMHKMPRIWIMYLVSLTQQKLVT
RTRRTFDRALCAFPVTQHDRIWEHYLVFVSQRGIPIETSLRVYRRHLKYDPSHIEDLLEF
LLNSELCQEAAERLAGVLNDDRFYSIKXKTKHRLWLELCDLLTQHATEISGLNVDAIIRG
GIKKFTDEVGRLWTSLADYYIRGKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESM
LALKMEEMSDSEVEGEGSNGEVGAEEDVDEEDDRLNVAKLKKKLKEFWLNDDKDIDLRLA
RLEHHMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQLLTFTEAVRTIDPMKAVG
KPHTLWVAFAKLYENHKDNANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGA
LELMRRATAEPTVEVKRRVAADGYEPVQIKLHKSLRLWLLFVDLEENLGSLESTRVVYER
ILILRIATPQLIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYG
KSKLERARELFEHAVEQTPADAVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPANEKL
SMYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGAIDRARALH
KHSSQFADPRSDHDFWNKWHEFEVQHGNEDTFREMLCVKRSVSASYSQTHFILPEDLMQK
DQMQTLEEAKDXMAALERQLAPENDTKSKEQSRVVGFVSAGVVESNGQKVTANNEDIELP
EESDSEEDDDKVEIALKEVPDAVFGGLIRKRDNKGDEAEDDSTDKNKDSDGPLGALERIK
RRKLQAS
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaatgatacaggctgccaagctcctgtcctttgtgttaacaattgtgggttt
ttcggtactgcagcaacaatgacaatgtactcaaagtgctacaaggatatgatattcaag
caagaacaagcaaactttgctgcttcatctattgaaaactttgtgaatggaagttcaagt
gcttgtgtgaaagctgttgatgttgctgtaaccgtgcaggaaggtcctgcagagtccctg
gttatacccacacaagttgcggcaccagtagagagtgtacaagttgagaaggctaaggaa
gggccaaacaggtgcaccacctgtaggagacgagttggtctacaagctctccccggaagc
aacaaaatatggcatgcgtatctccgcgaatgtctggagttagttcggaatcttccaatc
aaccactccctgtaccaagctctaaacaacactttcgagagagcgcttgttacaatgcac
aaaatgccacggatttggatcatgtacttggtgagtttaactcaacagaagctcgttaca
cgaactagacgcactttcgatagagcattgtgtgcatttcctgttactcagcatgatagg
atttgggaacattatttagtgtttgttagtcaaaggggaattcctattgaaacatcactt
agggtttataggaggcacttgaagtatgacccttcccatattgaggatttgcttgagttt
ttgttgaattctgagctgtgccaggaggcggcagagaggttagctggtgtattaaatgat
gatcggttttattccattaaangaaagactaaacataggctttggttggagctgtgtgac
ttgttaacacaacatgctacagaaatatcaggtttgaatgtggatgcgataattagagga
gggattaagaagtttaccgatgaggttgggaggctttggacgtcgttggcggattattac
attagggggaagttggttgagaaggcgagagatattttcgaagaaggtatgacaactgtg
gtgactgttagggattttagtgttatctttgatgcgtactcccagtttgaggagagtatg
cttgccttgaaaatggaggagatgagtgatagtgaggtggagggtgaaggtagtaacggt
gaggttggggcagaggaagatgtggatgaggaggatgataggttgaatgtggcaaaattg
aagaagaagcttaaagagttttggctgaatgatgataaggatattgacttgagattagcg
aggctagaacatcatatggataggaggccagagcttgcgaatagtgtccttttgaggcaa
aatccgcataatgtagaacagtggcatagaagggtaaaactattcgaagggaatccgaca
aagcaattattaacgttcactgaggcagttagaactattgacccaatgaaagctgtgggg
aagccgcatactttgtgggttgcatttgcaaaactttatgaaaaccataaggataatgca
aatgcaagagtcatctttgataaggcagtgcaggtgaattataaaaccgttgatcatctg
gctagtgtttggtgtgaatgggccgagatggaactacgtcacaggaatttcaagggtgct
ctagaactgatgagacgtgccactgctgaaccaactgttgaggtcaaacggagagttgct
gctgatggatatgaaccagtgcaaattaagctacacaaatctctaaggctttggttactg
tttgtggatttggaggagaatctaggaagcttagagtcaactcgtgtggtctatgagcga
attttgattctgagaattgctacaccacagcttataataaattatgcagtacttctggag
gatcacaagtactttgaggatgcattcaaggtttacgagaggggtgtgaagatcttcaag
tacccacatgttaaggatatatgggttacctatctttccaaatttgtgaagagatatggg
aagtcaaagttggaacgagctagagagttatttgagcatgctgttgaacagacccctgct
gatgctgtgaagccactgtatcttcaatatgctaaattagaggaagactatggtcttgcg
aagcgggctatgagggtttatgatcaagctacaaaagctgttccagcaaatgagaaattg
agcatgtacgagatctatatagctcgtgcagctgagatatttggtgttccaagaacacgg
gagatatatgaacaagcaattgagtctgggcttccagacaaggacgtgaaagttatgtgc
ttaaagtatgctgaacttgagaagagcctaggagcgattgatcgtgctcgtgcactacac
aagcactcatcacaatttgcagaccctagatctgaccatgatttctggaacaagtggcat
gagtttgaggtgcagcatggtaacgaggataccttccgcgagatgctctgtgtgaagagg
agtgtatctgcaagctacagccagacacattttatcctaccggaggatctcatgcaaaag
gatcagatgcagacccttgaggaagcaaaggacngtatggcagctcttgaaaggcagtta
gcgcctgaaaatgatacaaagagcaaagaacagagtcgggtagttggatttgttagtgca
ggagtagttgagtcaaatggacagaaagtcactgcaaacaatgaggatattgagctacct
gaggaaagtgattctgaagaggatgatgataaggttgaaattgcactgaaagaagtccct
gatgcagtgtttggaggtctaatccgtaagagggacaacaaaggtgatgaagcagaagac
gactctactgacaagaataaagatagtgatggccctcttggtgcgctagaaagaataaaa
cgaaggaaactacaagcatcttag
DBGET
integrated database retrieval system
