Solanum verrucosum: 125810429
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Entry
125810429 CDS
T11474
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
sver
Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125810429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125810429
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125810429
Spliceosome [BR:
sver03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125810429
Complex B
125810429
Complex C
U2 SnRNP specific factors
125810429
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
125810429
NCBI-ProteinID:
XP_049345870
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRQTTYNFERNQAPQRLYVPPSSRSGGSHDNYEDTDLDNIEYDEHEA
VGGNNDDGGGGGGEDDEIDPLDAFMEGIHEEMKAAPPPKPKEKLDKYKDDVDDDPMESFL
RAKKDVGLQLAADALHAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIVVDKKKIEPITALD
HSEIDYEPFNKDFYEEKPSISGMSDQEVNEYRTSLAIRVSGFDVPRPIKTFEDSGFSVEL
MKAISKQGYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE
EGPIGVICAPTRELAHQIFVEAKKFSKSHGIRVSAVYGGMSKLDQYKELKAGCEIVVATP
GRLIDMIRKKAFTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK
IEKLAREILTDPVRVTVGEIGTANEDITQIVEVIPSDAEKLPWLLEKLPGLIDNGDVLVF
ASKKATVDEIESQLAQKGFRVAALHGDKDQVSRTETLQKFKSGIYHVLIATDVAARGLDI
KSLKSVVNYDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELANSLVAAGQT
VSVELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGNNKGVRGVDFGLGIGYNPESNNPPQ
SAAPSRSAAVNSLRTGMMAQFKSSFVAASSKSQNQGMNNTAGAFPNKKMVLQGFVSGGTI
GGNSNTSHISSTFTAATSGAYTSSQPARDGANQKSSESSKEKSRERRRPSGWDR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaaattcggattcgagggatttggcattaatcggcaaacaacgtacaac
ttcgagcgaaatcaagctcctcagcgactgtatgttccgccatcctcacgttccggaggt
agccatgacaattacgaagataccgacttagataacattgagtacgatgaacacgaagct
gtcggagggaacaacgatgatggaggcggaggaggtggtgaggatgatgaaattgatcca
cttgatgcgtttatggaagggattcatgaagaaatgaaggctgcaccgcctcctaagccg
aaagagaagttggataagtataaggatgatgtagatgatgatccgatggagagttttctg
agggccaagaaggatgtagggttacaattggctgctgatgctcttcacgctggttataat
tccgacgaggaggtgtatgctgcagcaaaggcggttgatgcagggttagttgagtatgac
tccgacgataatccaattgttgttgataaaaagaagattgagcctattactgctctggat
catagtgagattgactatgagcctttcaacaaggatttttatgaggaaaagccttctatt
tcaggtatgagcgatcaggaagttaatgaatataggacaagcttggccattcgtgtatca
ggctttgatgtaccaaggccaattaagacatttgaagactctggtttttctgttgagttg
atgaaagctatcagtaaacagggttatgaaaagcctacaccaatacagtgtcaagcatta
ccaattgtgctctctgggagagatattattggtattgctaaaactgggtccggtaagact
gctgcttttgtgcttcctatgattgtccacatcatggatcagcctgaacttcagaaagaa
gaaggccccattggagttatttgtgcacccactagggaattagcacatcaaatatttgtg
gaggcaaagaaattttcgaaatcgcatggtatccgtgtgtctgcagtttatggaggaatg
tctaaattggatcaatacaaagaactaaaggcagggtgtgagattgttgttgctactcca
gggaggttgatagatatgatcagaaagaaggcatttacaatgttgagagcaacttatcta
gtgcttgatgaggctgatcggatgtttgaccttggtttcgagcctcagataaggtccatt
gttggtcaaattagacctgatcgccaaacattgctcttttcagcaactatgccccgcaaa
attgagaagcttgccagagaaatattgacggatcctgtaagagttactgtgggtgagatt
ggcacggctaatgaggatattacacaaatagttgaagtgattccttcggatgctgaaaaa
ttgccttggcttctggagaagctccctggactgattgacaatggtgatgttcttgtcttt
gcttcgaaaaaggcaacagtggatgagattgaatcccaattggctcagaagggatttaga
gttgcagctctccatggtgacaaggatcaagtttctcgtacggagacgctgcaaaaattt
aaatctggcatatatcatgttctcatcgcaactgatgttgctgctcgtggtcttgacatc
aaatcacttaagtcagtggtgaactatgatatagctaaagatatggacatgcatgttcac
agaattgggagaacaggtcgtgctggtgacaaagatggaacggcctacactcttattact
cataaggaagcacgttttgctggtgaactggcaaacagtttggttgctgctggtcaaact
gtgtccgtggaactaatggaccttgctatgaaggacggaaggtttcggtccaaaagggat
gcaaggaaaggaggtggaaaaagggccaaaggaaggggaggaggaaacaataaaggtgta
cgaggtgtggattttggtctagggattggatacaatcctgaatcaaataaccctccccag
agcgctgctccaagccgttctgcagctgttaattccctgaggacaggaatgatggcacaa
tttaaaagtagctttgttgctgcatcatcaaagtctcaaaatcaagggatgaataacaca
gctggcgcgtttcccaacaagaaaatggtcttgcaaggctttgtctctggtgggactata
ggtggaaatagtaatacttcccatattagttccacatttactgctgcaacatctggggca
tatacttctagtcagccagctagagatggagctaaccagaaaagttcagagagttcaaag
gagaagtccagagaaagacggaggccttctggttgggatcgttga
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