Solanum verrucosum: 125810556
Help
Entry
125810556 CDS
T11474
Name
(RefSeq) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
sver Solanum verrucosum
Pathway
sver03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125810556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sver03400
]
125810556
DNA repair and recombination proteins [BR:
sver03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125810556
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
nSTAND_NTPase5
Tudor_KDM3B
YL1
Motif
Other DBs
NCBI-GeneID:
125810556
NCBI-ProteinID:
XP_049345988
LinkDB
All DBs
Position
Unknown
AA seq
1307 aa
AA seq
DB search
MASSRRSSNGRSPLVNQQSQITSFFSKTLSSSSSPSPLLPKQIPEKSNPNPNTKRKPNLS
PSTSPCASPTTPSPLNAKRKITVPISAVVDLKPSYGQEVVDKRVKVYWPLDKIWYEGCVK
SFDSSSGEHLVKYDDGDEEMIDLAEEKIEWVKAPVRKLRRLRRSSVVEEEEEEKLEDLKS
VEDDSEDEDWGKDAAKQVSEGEDASDDMDLEIEEEDDDVVGPKSRKVSGSRVVARKRKTP
EGEKLTPSSSKKSKTVADKRSADSKMHSAVIGVNGKEYVATNEDCAKVSNNDNVLLCGAA
DRFGQRETQKFPFLGKDRKDANRRSPGDANYDPRTIYLPPNFLKGLTGGQRQWWEFKSKH
MDKVLFFKMGKFYELYEMDAHVGAQELHLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRV
LVVEQTETPEQLENRRREMGSKDKVVRREICAVVTKGTLTEGEMLAANPDASYLMAVTES
SLTAAFQQGKRTYGVCMVDISTGKIIIGQFEDDSDCSALCCLLSELRPVEIIKPAKLLSH
ETERVLMRHTRNPLVNELVPLSEFWDAERTICEVKGVYRNMSLSLLASSPNEMSTHESTA
SEEDGERNFLPDVLCELINLGGNGSYALSALGGVLYYLKQAFLDESLLKFAKFQLLPLSG
FCDGTQKWNMVLDAAALENLEIFENSRNGDSSGTLYAQINHCITAFGKRMLRSWLARPLY
RPESIRERQDAVAGLKGINLPSVLEFRKELSRLPDMERLLARLFGSSEANGRNANKVTLY
EDAAKKQLQEFISALRGCESMVHACSSLGVILGNTDSKLLHHLLTLGNGLPDVDSVLKHF
KGAFDWVEANNSGRIIPHEGVDEEYDAACKQVQEVELKLSKHLKEQRKLLGDSSIDYVTI
GKDAYLLEVPESLCRSIPKEYELQSSKKGYFRYWNPVLKRLIGELSHADSEKESKLKSIL
RRLIGRFCEHHNKWRELVSITAELDVLISLSIASDYYEGPTCRPNIKSVPSQDDVPVLLA
ENLGHPVLRSDSLDKGTFVSNNVSLGGPPNASFILLTGPNMGGKSTLLRQVCMAVILAQV
GADVPASSFDISPVDRIFVRMGAKDHIMAGQSTFLTELLETASMLSMASRNSLVALDELG
RGTATSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLSIDYQKDSRVSLCHMACQIGKGSG
GLEEVTFLYRLTPGACPKSYGVNVARLAGLPDDVLQRAAAKSEALEIYGHNKQSEENPSE
NLTGKTAALLQNLINLIVHNKYDDNKGVILAELNGLQNRARIVLEQN
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcgccgctccagcaatggcagatcaccgttagtcaatcaacagagccaa
atcacttctttcttctccaaaaccctctcgtcttcttcttctccttcacctcttctcccc
aaacaaattccagaaaaatctaaccctaaccctaatactaaacgtaaacctaatcttagt
cctagtaccagtccttgtgctagtcctacgactccttctcctctaaacgcaaagcggaag
attactgtgcctatttcagccgttgttgaccttaagccatcatatggacaagaggtagtg
gacaaaagagttaaggtttactggccgttggataaaatatggtatgaaggctgtgtgaag
tcttttgacagtagttctggtgagcatttggttaagtatgatgatggtgatgaggaaatg
attgatttagctgaagaaaaaattgaatgggtgaaggcacctgtgaggaagttgaggcgg
ttgcggagatcttcggtggtggaagaggaggaggaagagaaattggaggatttaaagagt
gttgaggatgattctgaggatgaagattggggaaaagatgctgctaaacaagtgtctgaa
ggtgaggatgcttccgacgatatggatttggagattgaggaagaagatgatgatgttgtt
ggacctaaaagtcggaaagtgagtgggagcagggtggtggcgaggaagaggaaaactcct
gaaggggagaagttaactccgagttcgagcaagaagagcaagactgttgcagataagagg
agtgctgatagcaaaatgcactctgctgtgattggagtaaatggaaaagagtatgtggcg
accaatgaggattgtgccaaggtatccaacaatgacaatgtattgctgtgtggtgcagca
gatagatttggacaacgtgaaacacagaaattcccattccttgggaaagatagaaaggat
gcaaataggaggtccccaggcgacgccaattatgatccaaggactatctacctacctcct
aattttttaaaaggtttaactggtggtcagagacaatggtgggagttcaagtcgaagcac
atggataaagttctgttttttaagatgggaaaattctatgagctttatgagatggatgca
cacgttggagcccaggaacttcatctgcagtatatgaagggagagcaaccacattgtgga
tttccagaaaagaacttctcaatgaatgtagaaaagttggctcggaagggttatagggtt
cttgtggttgagcaaacagagacacctgaacagcttgagaatcgtagaagagagatggga
tctaaagataaggttgtcagacgtgaaatatgtgcagtagtcactaaaggaacattaact
gagggagaaatgcttgcagcaaaccctgatgcttcatatttgatggcagtgactgaaagc
tctctaactgctgcattccaacaggggaagcgtacttatggtgtctgtatggttgatatt
agcacgggcaagattattattggacagtttgaggacgattcagattgtagtgccttgtgt
tgtctactttctgagttaagaccggtggaaataataaagcctgctaaattgcttagtcat
gagaccgagagagtgctgatgcggcacacacgaaatccgctagtgaatgagttggttcct
ctttctgaattttgggatgctgagagaacaatttgtgaggtgaagggagtatacaggaac
atgagcttgtcactgctggcatcatctccaaatgaaatgtcaacacatgaaagcactgcc
tctgaggaagatggtgaaaggaactttctaccagatgttttatgtgagcttataaatctt
ggtgggaacgggagttatgcactctcagcacttggaggagtgctatactacttgaagcaa
gcttttctggatgaatccctgctcaaatttgcaaaatttcagctacttcccctttctggt
ttttgtgatggtactcagaaatggaatatggttcttgatgcagctgcactggagaatctt
gagatatttgagaacagtcgaaatggagattcttcagggacattatacgctcaaatcaac
cactgtatcacagcatttgggaaaaggatgctcagatcatggcttgcaagacccttgtat
cgtccagaatccattagagaacgtcaggatgctgtagccggattaaaggggatcaatcta
ccttctgttcttgagtttagaaaggagttatcaaggcttcctgatatggagcggttgctt
gcacgcctctttggtagcagtgaagccaatggaagaaatgcaaataaagtgactttatac
gaggatgcagcaaagaaacaactgcaggagttcatatcagctttacgtggatgtgaatca
atggtgcatgcatgctcttcacttggggtgatcttgggaaacacagactcaaagctactt
catcatctattaacactcggcaatggtcttccagatgtagattcagttctcaagcatttc
aagggtgcttttgattgggtggaagcaaataactcaggtcgtattatacctcatgaaggg
gttgatgaggagtatgatgctgcatgtaaacaagttcaggaggttgaacttaaattatcc
aagcacttaaaggaacagaggaaactgcttggagactcatcaatagattacgtgacaata
ggaaaagatgcatatcttttggaagtaccagaaagtttgtgcaggagcattccaaaggag
tatgaattacagtcatcgaaaaagggttatttcaggtactggaatccagtcttaaagaga
ttaattggagagctttcacatgctgattcagagaaggaatctaagctaaaaagcattttg
cggaggttgatagggcggttttgtgaacatcataataagtggagagaattagttagtatt
actgcagaattggatgttttaatcagtttgtcaattgcaagtgattactatgagggacca
acatgtcgtccaaacatcaagtcggtgccaagtcaagatgacgtgccagttcttcttgct
gaaaatttaggacatcctgttcttagaagcgattctctagataagggaacctttgtttcc
aacaatgtttcccttggcggtcctccaaatgccagctttatccttctcactggtcctaac
atgggagggaaatcaactcttttgcgccaagtctgcatggctgtaattttggcccaggta
ggagctgatgtaccagcatcatcgtttgacatatcacctgttgatcgtatatttgtaaga
atgggcgccaaagatcatattatggcaggccagagtacattcttgacagaactcttggaa
actgcttcaatgctgtctatggcaagccgtaattcactcgtcgcgcttgatgaacttggc
cgcggtacagctacttctgatggacaagcaatagctgaatcagttctcgaacactttgtc
cacaaggtgcaatgtcgaggaatgttttctacccactatcatcggttatctattgactat
caaaaagactccagggtgtcgctgtgccatatggcatgccaaattggaaaaggttccgga
ggtcttgaggaagttacttttctttacaggttgacaccaggtgcatgtcctaaaagttat
ggtgtcaatgttgcacggcttgctggacttcctgatgatgtgcttcagagagctgctgca
aaatctgaggcgcttgagatttatggccacaataagcaatctgaagaaaacccttctgag
aatttgacaggaaagactgcagcactgcttcaaaatttgataaatttgatcgtacacaat
aaatatgacgacaacaagggtgtgattcttgctgagttgaatggactgcagaacagagca
agaatagtccttgaacaaaattga
DBGET
integrated database retrieval system
