Solanum verrucosum: 125815569
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Entry
125815569 CDS
T11474
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125815569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125815569
03036 Chromosome and associated proteins [BR:
sver03036
]
125815569
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125815569
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125815569
mRNA degradation factors
5'-3' decay
Decapping complex
125815569
Chromosome and associated proteins [BR:
sver03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125815569
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
125815569
NCBI-ProteinID:
XP_049351026
LinkDB
All DBs
Position
Unknown
AA seq
502 aa
AA seq
DB search
MNPRPRFQSPGMEGRGGGGGSGSGGGSMHPNTNPNFQNRNPQQYMQRGPAPYQQQQPQQQ
QQHFQNQQTQQWLRRNQLPSADSTVAEVEKNVQSEAVDQSSQEWKARLKIPLPDTRYRTE
DVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTA
SFCIPALEKIDQDKNVIQAIILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDI
MRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMFIMDEADKLLSPEFQPSIEQLIRFVPA
NRQILMFSATFPVTVKDFKERYLRKPYVINLMDELTLKGITQFYAFVEERQKIHCLNTLF
SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV
CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVSLITFEDRFNLYRI
EQELGTEIKQIPPQIDQAIYCQ
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagaccaagatttcaatcgccagggatggagggacgtggaggcggcggcggc
agcggcagcggcggggggagtatgcacccaaatactaacccaaactttcaaaatagaaat
cctcagcagtatatgcagagaggacctgcaccctatcagcagcagcagccgcaacaacaa
caacagcattttcagaaccagcaaacacagcagtggcttagaagaaaccagttgccatct
gccgattccaccgttgccgaggttgaaaagaatgtacaatccgaagccgttgaccagagt
tcacaagaatggaaggctaggttgaagataccactacctgatactcgatacagaacagag
gatgtgacagcaactaaaggaaatgagtttgaagactactttcttaagcgtgaactgctt
atgggaatttatgaaaagggctttgagagaccatcaccaatccaggaggagagcattcca
attgctctgactggaagtgacattttggctagggccaaaaatggaactgggaagactgct
tccttctgcattcctgctttagagaaaattgatcaagacaagaatgtgattcaagctatt
attcttgtcccaactcgagaattggccctccaaacatctcaagtttgtaaagaacttggg
aagcacctaaaaattcaagtcatggttaccactggggggactagcttaaaggacgacata
atgagactgtatcagccagttcatttacttgttggaactcctggaagaattcttgacctt
gcaaaaaagggggtgtgcgttttgaaagattgctccatgtttatcatggatgaggcggat
aagcttctttcgccagaattccaaccttccatcgagcagctgatccgcttcgtacctgca
aatcgccagattttgatgttttctgcaacatttcctgtcactgtcaaggactttaaagaa
agatatttgcgcaagccatatgttatcaacctcatggatgaacttacgctcaagggtata
acacaattttatgctttcgttgaagaaagacagaagattcactgccttaacactctcttc
tcaaagcttcaaattaaccaatcaattattttttgcaactctgtaaatcgtgtggaactt
cttgccaagaagattactgagctgggctattcatgcttctacattcatgctaaaatgctt
caagatcataggaacagggtgtttcatgacttccgtaatggtgcctgcaggaaccttgtt
tgtactgatttgtttactagaggaatagatattcaagcagtcaatgttgttatcaatttt
gatttccctaagaactcagaaacgtatttgcacagggttggacggtcagggagatttgga
caccttggtttagctgttagcctgattacttttgaggatcgcttcaatttgtacagaatt
gaacaagaactaggaacagagatcaagcaaattcctccacagatagatcaagctatatat
tgtcaatga
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