Solanum verrucosum: 125816561
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Entry
125816561 CDS
T11474
Name
(RefSeq) uncharacterized protein LOC125816561
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sver Solanum verrucosum
Pathway
sver03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125816561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sver03021
]
125816561
03019 Messenger RNA biogenesis [BR:
sver03019
]
125816561
Transcription machinery [BR:
sver03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125816561
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125816561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
125816561
NCBI-ProteinID:
XP_049352133
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MLPGRNSRPQHPSKLQANGTAPSPPLQVMGNPGSFMPNHMQIQSQMAIPNNNPNTQFFPG
QLLAYQMNQMNNANSQQKGQFSGQNIGNPPQFLNQNVGFGVMPNPMQNMNQFLQMQMAMQ
IASYAQALSGSVPMYPNQVPQGMGIQNSNIAMNNAHLGHANASGNLSKQMANGSQQLQGQ
SPVMNSFGVVQQPQTQSFNAHASANPQVSQGMGPQSSNSGMNAHLGLVNANVAAQQSKNG
LSKQMPNATQQLLGQLPLMNSFGFVQQPQTQNFNPPASANTQVCHGIGPQIPNFSMNAHL
GLLNANGAVQQMPNVNQQLLGQLPMMNQFGFVQQPQTQNFNAPASTNTQANPGCVVGINP
SKGNQQNSYNSNFSRNQKHGAKMSKFGKGKFSTHNKNLEKGHHRNREKKNIDINSVKPEM
EKKRPLLVTYSAQEIQQWREERRKNYPSKGNIEKQLTGKMVESEDNSCAAKLRRQQLKEI
LAKQAELGFEVAEIPSSYLSDTEKQVDGMEQKRPLSRKERFQKRFNKKEKFNRNDRFSKK
RRFGNSDSSNTCDQKGFPAGKQDVNRESVTQVTKSARESTLLQKLLSSDIRRDKRRLLQV
FRFMTMNSFFKDQPGKPLRFPRVLLKETGKEIEAAEEISDVIDTNIEKSSSSDDDNDNDE
EDNIAEFTEAVSELQENSNSESEEPEEDD
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgggtagaaattcacggcctcagcatccttctaagcttcaggccaatggaact
gctccttcacctcccctgcaggttatgggtaacccaggaagttttatgccaaaccatatg
caaattcagtctcagatggcaattccaaacaataacccgaatacccagtttttccctggg
cagcttttggcataccaaatgaatcagatgaataatgctaattctcaacaaaaaggtcaa
ttctcgggacaaaatattggtaacccacctcagttcttgaatcagaatgttggttttggg
gttatgcccaatccaatgcaaaatatgaatcagtttctgcaaatgcaaatggctatgcaa
atagcaagttatgctcaggctctttcagggagtgttcccatgtatccaaaccaggtgcct
cagggtatgggaattcaaaattctaacattgcgatgaataatgcgcatttgggtcatgcg
aatgcaagtggaaatttgtctaagcaaatggctaatgggagtcagcaattgcaagggcag
tcgcctgtgatgaactcttttggtgttgttcagcagccacagactcagagcttcaatgct
catgcttctgctaatccacaggtttctcagggtatgggccctcaaagttccaactctggt
atgaatgcacatttgggtcttgtgaatgccaatgtagccgcccagcagtctaagaatggc
ttgtctaagcaaatgcctaatgcgactcagcaattgctaggccagttgcctctgatgaat
tctttcggctttgttcagcagccacaaactcagaactttaatcctcctgcttctgctaat
acacaggtatgtcatggtatagggcctcaaattcccaacttttctatgaatgcgcatttg
ggtcttttgaatgccaatggagctgtccagcaaatgcctaatgtgaatcagcaattgcta
ggccagttacctatgatgaatcagtttggctttgttcagcagccacaaactcagaacttc
aatgctcctgcttctactaatacacaggcaaatcctggatgtgttgttgggattaaccca
tcaaaaggcaaccagcaaaattcttataatagtaacttctcgaggaatcaaaagcacgga
gctaagatgtccaagtttggtaaagggaagttctcaactcataataaaaacctggaaaaa
ggtcatcacagaaatagggagaaaaaaaatattgatattaattcagtgaaacctgagatg
gagaaaaagagacctctcttggtgacttactcggcgcaagaaattcaacagtggcgggaa
gaacgccgtaagaactacccttcaaaaggaaacattgagaagcagctgacagggaaaatg
gtagagtccgaggataattcgtgtgctgccaagttgcgccgtcagcaacttaaggaaatt
ctagccaagcaggctgagttaggctttgaagttgcagaaataccatcatcctatctgtca
gatactgagaaacaagtggatggaatggagcaaaaaaggccactgagtagaaaagaaagg
ttccaaaaaaggttcaataaaaaagaaaagttcaaccgaaatgatcgtttctccaagaaa
cgaagatttggaaactccgattcctcaaatacttgtgatcaaaagggcttccctgcagga
aaacaggatgtaaaccgtgaatctgtaactcaggttacaaaaagtgcgagagaatcaaca
ctgctgcagaaactattgagttcagatattcgaagagataaacgacgcctattgcaggtc
tttaggttcatgaccatgaattctttctttaaagatcagccggggaaacctttgaggttt
cctcgagtgttgcttaaggaaacagggaaagaaattgaagctgctgaagaaatatctgat
gttatagatacaaacattgaaaaatcatcgtcatcagacgacgacaatgacaacgacgaa
gaagataatattgctgaatttacagaagcagttagtgagttacaagaaaatagtaacagt
gaaagtgaagaacctgaggaagatgattaa
DBGET
integrated database retrieval system
