Solanum verrucosum: 125816608
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Entry
125816608 CDS
T11474
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
sver Solanum verrucosum
Pathway
sver03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125816608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125816608
03009 Ribosome biogenesis [BR:
sver03009
]
125816608
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125816608
Ribosome biogenesis [BR:
sver03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
125816608
Pre-60S particles
125816608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT_GCN1
HEAT
TPR_IPO5
IBN_N
HEAT_MROH2B_C
TOR1L1_N
TPR_IMB1
HEAT_2
TPR_DNAAF5
INTS7_N
TIP120
Usg
TPR_26
Motif
Other DBs
NCBI-GeneID:
125816608
NCBI-ProteinID:
XP_049352178
LinkDB
All DBs
Position
Unknown
AA seq
891 aa
AA seq
DB search
MAATGTWQPQEQGFKEICGLLEQQMSPTSDNSQIWQQLQHYSQFPDFNNYLAFIFARAEG
KSVDIRQAAGLLLKNNLRSAFQNMPLANQQYIKSELLPSLGAADRHIRSTAGTIISVLVQ
IDGVAGWPELLQALVSSLDSSDVNHVEGAMDALSKICEDVPQLLDSDISGLSERPITVFL
PRFLLLFQSPHASLRKLSLSSVNQYIMLMPKILHLSMDKYLQGLFLLANDPAPEVRKLVC
AAFVQLIEVRPAVLEPHLRNVLEYILQVNKDPDEEVALEACEFWSAYCDAQLPPENLREF
LPRLIPVLLSNMVYADDDESLLEAEEDGSLPDRDQDIKPRFHSSRFHGSEDGEDDDEDIV
NVWNLRKCSAAALDILSNVFGDDILPTLMPVVQAKLSCSNDEVWKEREAAVLVLGAIAEG
CINGLFPHLSEIISFLIPLLDDKFPLIRSISCWTLSRFSKYIVQGTDHQDGREQFNKILM
GLLRRVLDDNKRVQEAACSAFATLEEEAAEELAPCLEIILQHLMCAFGKYQRRNLRIVYD
AIGTLADAVGGELNQPKYLEILMPPLIGKWEQLPNSDKDLFPLLECFTSIAQALGTGFAQ
FAQPVFQRCITIIQSQLLAKVDPVKAGFQYDREFIVCCLDLLSGLAEGLGSGVESLVSQS
NLRDLLLQCCLDDAPDVRQSAFALLGDLARVCPVHLRPRLVEFLDAATKQLQNTSKLKET
ISVANNACWAIGELAIKVQKEISPVVLTVVSCLVPILQHAEKGLNKSLIENSAITLGRLA
WVCPELVSPHMEHFLQTWCFALSMIRDDIEKEDAFRGLCAMVKANPSGALNSLVFMCKAI
ASWHEIRSEDLRNEICLVLQGYKQMLKDGAWEQFMSALEPSVKDKLSMYQV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgactggaacatggcagccacaagagcaaggtttcaaggagatctgtggatta
ttggagcaacaaatgtctccgacttcagataattctcagatttggcaacaacttcaacac
tactctcagtttccagatttcaataactatctcgcctttatcttcgctcgtgccgaggga
aagtcagttgacattcggcaggcagctgggttgctattgaaaaataacctgagatctgca
ttccagaacatgcctcttgctaaccagcaatacataaaatcagagttgctaccttctcta
ggggcagcagatagacacattaggtccacagctggaaccatcattagtgttcttgtacag
atagacggagttgctggatggccagagttgctacaggcacttgttagtagcttggatagt
agtgatgtaaaccatgtggaaggagccatggatgctttatcaaagatctgcgaggatgtc
ccacaactccttgattctgatatttctggattatctgaacgacccattactgttttcctt
ccaaggtttctcctgcttttccagtcgcctcatgcttctctcagaaagctgtcattgagt
tctgtgaatcaatatataatgctgatgcctaaaattttgcatctatccatggataaatac
cttcaaggcttgtttcttcttgccaacgaccctgctccagaagtgcggaaattggtttgt
gcggcatttgttcaactaattgaagttcgtcctgccgttttggagccacacttgaggaat
gttttggaatatatattgcaagtcaacaaggatccagatgaagaagtggcgctcgaagct
tgtgaattttggtccgcatactgtgatgctcagttgccacctgagaacttgagagaattc
ttgccacgattgattccggttttgctgtctaacatggtatatgctgatgacgatgagtca
cttttggaggctgaggaggatggatctctgccagatcgtgatcaggacatcaaacctcga
tttcattcttcacgttttcatggttccgaggatggtgaagacgatgatgaagacatcgta
aatgtgtggaatttacgtaagtgtagtgcagctgctctggacattctctctaatgtgttt
ggtgatgatattctacccacgttgatgcctgtcgttcaggctaaattgtcatgttctaat
gatgaagtctggaaggaaagggaagcagctgtgctagttctgggtgctatcgccgagggc
tgcataaatggacttttccctcatttatcggagatcattagctttctcatcccactttta
gatgacaagtttcctctaatacgaagcatttcctgttggacgctgtcccgcttcagcaaa
tatattgttcagggcactgatcatcaagatgggcgtgaacaattcaacaaaattttaatg
ggtcttttacggagagtattggatgataataaacgagtgcaagaagctgcttgttcagcc
tttgctactcttgaagaggaagctgcggaagagttagccccatgcttggaaatcattttg
caacacttgatgtgtgctttcggaaaataccagagacggaaccttagaatagtgtacgat
gccattggaacgttggcagatgcagttggaggggaacttaatcagcccaagtatcttgag
attttaatgcccccattaattggaaagtgggagcaactcccaaattcagacaaggatctt
ttcccactgctcgagtgctttacctcaattgctcaggctttgggtactggatttgcacaa
tttgctcaaccggtatttcagaggtgcattaccatcatccagtcacaactattggcaaag
gttgatcctgttaaagctggattccaatatgaccgagaattcattgtttgttgcttggac
ctgctgtctggacttgctgaaggtcttggcagtggtgttgagagtttggtttcgcaaagt
aatttaagggatttgttgcttcaatgttgcttggatgatgcacctgatgtgcggcagagt
gcttttgctttgcttggtgatcttgcgagggtttgtcccgttcatctgcgacctcggttg
gttgaatttcttgatgctgctactaagcaactgcaaaacacttccaagctgaaggaaacc
atctctgtggccaacaatgcatgttgggcaattggagaattagcaatcaaggtccaaaaa
gagatatctccagtagtcctgactgtagtctcatgcttagtaccaatccttcaacatgct
gagaagggtctgaacaagtcactgatagagaatagcgcaatcacccttggaagacttgca
tgggtttgtccggagcttgtgtcaccacatatggagcattttctgcaaacatggtgtttt
gctctgtctatgatacgtgatgatattgaaaaggaagacgcctttcgtggtttatgcgca
atggtaaaggcaaatccatcaggtgcattaaattcactcgtctttatgtgcaaagccatt
gcaagttggcatgagataagaagtgaagatctacgcaatgaaatctgcttggttttgcag
ggatataagcaaatgctcaaggatggtgcttgggaacagttcatgtcagctttggagccc
tcagtgaaggacaagttgtcgatgtatcaagtttaa
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