Solanum verrucosum: 125816837
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Entry
125816837 CDS
T11474
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
sver Solanum verrucosum
Pathway
sver03013
Nucleocytoplasmic transport
sver03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125816837
03015 mRNA surveillance pathway
125816837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125816837
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125816837
mRNA cycle factors
P-body specific factors
125816837
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
125816837
NCBI-ProteinID:
XP_049352432
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MKGPLDRSKVVLRHLPPTISQSMLLDQVDSRFAGRYNWFCFLPGKSSQKHQTYSRAYIEF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKHWSKKDGREGTILKDPEYLE
FLEFISKPIENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARKSIANG
RPTRRTSGTSAGSPSSSASKRSSEKRRASTTMYVLRDSSKAGSGKDKTYILAPKRDDQQR
AEKSGTSAPGSVANAVEEETGGAADVGKKKILLLKEKENPNNQRREASGRIIRSILLKDA
RQNQAPSASQQEKHRVDKDKKPPRPPCVQLFQRETNGANEDKVLGADLHIVHTEKQEKRT
RIRDRPDRGVWTPLRRSDSLHASDESLSSSASQSSEVPDFVEGSQGETKHGLPNARGAEF
RPMGSGRNSHSSFDNGTYKHGGRRGMRDDGISVGEGKPLRRGGPSSYGTHEKQVWVQKSS
SGT
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcccgttagatcgatcaaaagtagtgctgcggcacttgccgccgacaatttct
cagtccatgcttcttgaccaagttgattcccgattcgctggtcgatacaactggttctgt
tttctacccggcaagtccagccagaagcatcaaacttattcaagagcctatattgaattt
aagaggccagaagatgttatcgagtttgcagagttctttgatggacacgtttttgtaaac
gagaaaggcactcagttcaaaactattgttgagtatgctccttcacagcgtgttccaaaa
cactggtccaagaaggatggccgtgaaggaaccatcttgaaagatcctgaatatctggag
ttccttgaatttatctcaaagcctattgagaatcttccaagtgcagaaatacagttggaa
agaaaggaagctgaacgcgctggttctgcaaaggatgctcctatagttactcctttgatg
gattacatacgtcagaaaagagccgccaagagtggagctcggaaatctatagctaatggg
agaccaaccagaagaacgagtggcacatctgcaggaagtcctagctcaagtgcatctaaa
cgaagctctgaaaagagacgggcttccactaccatgtatgttcttcgagatagttctaag
gctgggagtggcaaagacaaaacatatattctagctccaaaacgtgatgatcagcagcgt
gctgagaagtctggtacctctgctcctggatctgtggctaatgcagttgaagaggaaact
ggtggagctgctgatgttgggaagaagaaaatcctgctcttgaaggaaaaggaaaatcct
aataaccagcgtcgtgaggcaagtggaagaatcattagaagtattcttctcaaggatgct
cgtcaaaatcaggccccatctgcatcccaacaagaaaaacacagggtggataaggacaaa
aagcctcctaggccaccatgtgtccagttgtttcagagagaaactaatggagctaatgaa
gataaggttcttggagctgatttgcatattgtccacactgagaaacaggaaaaacgcact
aggatcagggataggcctgatcgtggtgtttggactcctcttcgtcgttctgatagttta
catgctagtgatgagtctttatcttcatctgcctctcaatcttccgaagtgccagatttt
gttgaaggaagtcaaggtgaaaccaaacatggtctgccaaatgctcgtggtgcggagttc
agacccatgggaagtgggcgtaattctcattcttcttttgacaatggtacttataaacat
ggtggtcgtcgtggtatgagggacgatggaatttcagtaggggaaggaaaacccttaaga
aggggaggtccttctagctatggtacccatgagaaacaagtgtgggtccaaaagtcaagt
tctggtacttag
DBGET
integrated database retrieval system
