Solanum verrucosum: 125816877
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Entry
125816877 CDS
T11474
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125816877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125816877
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125816877
Spliceosome [BR:
sver03041
]
Complex C
Other components
Step II factors
125816877
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
S1
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
Sigma54_activ_2
AAA_16
TsaE
ABC_tran
nSTAND_NTPase5
Flavi_DEAD
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
125816877
NCBI-ProteinID:
XP_049352481
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MGADIAENELKKLEYLSLISKVCSELEAHLGFGDKVLAEFITELGRNCLTVDEFDDKLKE
SGAEMPDYFVKTLLTIIHAILPPSAKSKLEKELNKDGNDSEFSALKIRDNRDRVKELEKE
IELEANSKRRDGEGEERDRRRERDRDYRRERGRDRDRDRDRGRDRDRDDGRAERRASERR
RDRDGDGDVYAKGRRDDYEQDGDDDRRDRRKSRHHVDEPELYAVYKGRVSRVMDSGCFVQ
LNEFRGKEGLVHVSQLATRRVSNAKDLVKRDQEVFVKVISISGQKLSLSMRDVDQNTGKD
LLPLKKSSGDGGLTTNPSGMNNEGSKTRIGLSGIRITEQEDVAPSRRPVKRMSSPERWEA
KQLIAAGVLGVQEHPMFDEEGDGMLYQEEGGVDEELEVELNEDEPPFLQGQSRYSVDMSP
VKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHL
AQELRGVGLSAYDMPEWKKDAYGKAVTFGQRSKLSLQEQRQSLPIYKLKKELVQAVHDNQ
VLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAATSVAKRVAEEFGCRLGEEV
GYAIRFEDCTGPETVIKYMTDGMLWREILIDDNLSQYSVIMLDEAHERTINTDVLFGLLK
QLMKRRPDLRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEILYTKQPESDYLDASLI
TVMQIHLTEPEGDILLFLTGQEEIDYACQCLYERMKGLGKNVPELIILPVYSALPSEMQS
RIFDPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKQNVYNPKQGLDSLVITPISQA
SAKQRAGRAGRTGPGKCYRLYTESAFHSEMSPTAVPEIQRINLGNTVIMMKAMGINDLLS
FDFMDPPTPQALISAMEQLYTLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDFGCS
DEILTIIAMIQTGNVFYRPREKQAQADQKKAKFFQPEGDHLTLLAVYEAWKAKNFSGPWC
FENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFAKIQKAIGAGFFFHAARKDPQE
GYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFFK
TADPTKLTKRKRQERIEPLYDRYNEPNSWRLSKRRA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgggagccgacatcgcagaaaacgagttgaagaaattggaatacctctcgctaatttct
aaggtatgttctgagttggaggcacatttagggtttggtgataaggttctagctgaattt
ataactgagcttggtagaaattgcttaacagtagatgaatttgatgacaaattgaaagaa
agtggtgctgaaatgcccgattatttcgtaaaaacattgctcactataatccatgctatt
ttgcctcctagtgccaagtccaagttggagaaggagttgaacaaggatggcaatgattcc
gagttttcagctctgaaaatcagagataatagggatagggttaaggaattggagaaggag
attgagttggaggctaatagtaagaggagagatggggagggagaagaacgggataggagg
cgagagagggatagagattatagaagagaaaggggtagagacagggatagggatagggat
aggggtagggatcgagatagagatgatggtagagctgaacgtagggcttcagaaaggcgc
agagacagggatggagatggagatgtatatgcaaagggtaggagagatgattatgagcaa
gacggggatgatgatcggagggataggagaaaatcgaggcatcatgtggatgagccagag
ttgtatgcagtatataaggggagggtatcaagggtgatggattctggttgttttgttcag
ctgaatgaatttagagggaaagaaggcttggtgcatgtttcacaacttgctactagaagg
gttagtaatgccaaagatttagtaaaacgggaccaggaggtttttgtgaaggttatctct
attagtgggcagaagctgagtttgtcaatgagagatgttgatcagaatacaggaaaggat
ctgcttccattgaagaagagctcaggcgatggtggattgacaacaaatccttcaggcatg
aataatgagggctctaagaccaggattggcctgtcaggaatcaggattacggagcaagag
gatgtagctccatcacgtagacctgtgaagaggatgagttcacctgaaaggtgggaagcg
aaacaacttattgctgcaggtgtcctgggggtccaggaacatcccatgtttgatgaagaa
ggggatggaatgctatatcaggaagaaggtggtgttgatgaagagcttgaggttgaattg
aatgaagatgaaccccctttcttgcaagggcagagtcgttattcagttgatatgtctcct
gtcaaaatttttaaaaatcctgaaggatcattgagtcgtgctgctgcactacaatcagct
ttgataaaggagagaagggaagtaagggagcagcaacagagaacgatgcttgattctatc
ccaaaggatctcaacagaccatgggaagacccaatgccagagacaggtgagaggcatttg
gcacaggagctgaggggtgttggtttgtctgcctatgacatgccagaatggaagaaagat
gcttatggtaaagccgtgacctttggccagaggtctaagctatccctccaggagcagcgg
cagagtcttcctatttacaaattgaagaaagaactggttcaggctgtccatgataaccag
gtcctggtcgtcattggtgagacaggttctggcaagacaacacaggtgacacagtatcta
gccgaggcagggtatacaacgaggggaaaaattggctgtactcaacctcgtcgagtggct
gcgacatcagtcgctaagagagttgctgaggagtttggttgtcgattaggtgaagaggtt
ggttatgctattcgttttgaagattgtactgggccagaaactgttatcaaatatatgact
gatggtatgctttggagggagatcctgattgatgataatttgtcccagtattcagtcata
atgcttgatgaagcacatgaaagaacgattaacactgatgttctatttggtttgcttaag
cagctaatgaagagaagacctgaccttcgtctaattgtcacgtctgcaactttggatgca
gagaaattttctggttatttctttgactgcaacatctttacaatcccaggaagaactttt
ccagttgagatactctacacaaagcagccagaaagtgattaccttgatgcgtctttaatt
actgtcatgcagatccacttgacagaacctgaaggtgatatcctcctcttcttgactggt
caagaggagattgattatgcttgccagtgtctctatgagaggatgaaaggactaggtaaa
aatgttcctgaactgatcatactacctgtctatagtgccttgcccagtgaaatgcagtcc
agaatttttgatcctgcccctcctgggaaaagaaaagttgttgttgctacaaatattgct
gaagcttctttgacaattgacggtatatattatgttattgatcctggatttgcaaagcaa
aatgtctacaatccaaaacagggtcttgattcacttgttattaccccaatttcacaagca
tcagcaaagcaacgagcagggcgtgctggacgaactggacctgggaagtgctaccgtctg
tatactgagagtgcattccacagtgaaatgtctcctactgcagttccagaaatccagagg
ataaatcttgggaacaccgttattatgatgaaagcaatgggtattaatgatcttttgtca
tttgatttcatggacccacctacccctcaggctctcatatctgccatggagcaactttac
actcttggagcactggatgaagaggggcttctgacgaaactgggaagaaaaatggcagaa
tttccattagatcctcctttgtccaagatgcttcttgctagtgtggacttcggctgtagt
gatgagatcttgaccatcattgctatgattcaaactggaaacgtcttttaccgaccaagg
gaaaaacaagctcaggccgatcagaagaaggcgaaattttttcagcctgagggtgatcat
cttaccttgcttgctgtttatgaggcttggaaagcgaaaaacttttccggtccatggtgt
tttgaaaattttgtccagtcacgatcacttaggagggcacaggatgtcagaaaacagttg
ctctccatcatggacaagtataaattggatgttgtgagtgccggaaagaacttcgcaaag
atccagaaggctattggagcaggtttcttttttcatgctgctagaaaggatcctcaagag
ggttatagaactttagttgagaaccagccagtttacattcatcctagcagtgctcttttc
caaagacagccggactgggttatttatcacgagcttgttatgacaacaaaggagtacatg
cgcgaggtgaccgtggtagatcctaaatggcttgttgagttggcaccaagattcttcaag
acggctgacccaacaaaattaacgaagcgcaagagacaggaacgtattgaacctctttat
gatagatataacgagccaaactcatggcgattgagtaaacgccgagcgtga
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integrated database retrieval system
