Solanum verrucosum: 125817082
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Entry
125817082 CDS
T11474
Name
(RefSeq) uncharacterized protein LOC125817082
KO
K06100
symplekin
Organism
sver Solanum verrucosum
Pathway
sver03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125817082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sver03021
]
125817082
03019 Messenger RNA biogenesis [BR:
sver03019
]
125817082
Transcription machinery [BR:
sver03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125817082
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125817082
U7-dependent histone pre-mRNA processing factors
125817082
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
Adaptin_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
125817082
NCBI-ProteinID:
XP_049352616
LinkDB
All DBs
Position
Unknown
AA seq
1316 aa
AA seq
DB search
MVGMMSPISRERITSLLNAAKFASDVPSKLHSLRRLKDELSGAGGPLLKEFLPTLIDLVS
DRFSPVRKLTIQMVGCIGFEHGELLPDIIPVLISALKDDTPAVARQAITCGIGIFRCTLV
KVAIQGLFSSQLDGSLESAWALMLKFREEIYTMAFQPASDGRKLLALKFVESVVLLYTPD
PSVGSEPPPALDIKGKFEQFNVSWLRGGHPVLDIGDLSVKASQSLGLLLDQLRSPAVKSI
TNLMIIVVIKCLSEIATKRPAFYGRILPVLLSLSPSSSDGNKMHVSGVYRALKIAFISCL
HCTHPGAAPWRDRLEGALREKRAGVQAEPVVSQDSQNNGDTELKDVSSILEDSKPSIKSS
AGTKRSGVEHNAELIDDNLSKKRMRSAPIVSKAPKQEPSGNQERVSAGGSTTTRSDGDNV
NLQPLVAMFGTLVAQGEKAAASLDILISSISADLLADVVMANMRNLPSNQPKVVDDEEPP
LKPEIESDFRRLSLLLTDTISQSSMLAEKDERADQSLVSIEPELQKIKGGEEHLDPVTTN
VTSDALNCASEEAPEYVTEPLSSTKSTPLLIENDVSSLQCDVADIEKTEDSIPGLDSVAL
KDEASELVAVSAGPTEVEDGTQDQGSSVVRSSLEVVPSNSTDRSEELSPKAAVTDVTSMN
SSTATSIGLSPQLLLPKISAPVINLSEEEKDNLQKSAFTRVIDAYKQITIAGGSQVRFSL
LAYLGVEFPSELNPWKFLQTHILSDYMNLEGHELTLRVLYRLYGHAEEDQDFFSSTAAAS
VYETFLLTVAETLRDSFPASDKSLSRLLGEAPHLPNSTLKLLESFCCPGSCEKDEKELHS
GDRVTQGLSTVWNLIMLRPLMRDACLKIALQSAVHHLEEVRMKAIRLVANKLYPLTSISQ
QIELFANEMLMSVSTVDHKADSNGDGSDPALQKDSGSEKSSEEGPSFSISNPLQSSTSGS
KSPFSIAEGQRRISLYFALCTKKHSLFGQIFVVYSGASEAVQQAIHQQIHMLVRTIGSSS
ELLEIISDPHSGSEKLLIQVLQTLTEGIVPSLQLITTIRNLYETKVKDVELLIMILPFLS
KDEVLLLFPHVVNTPLDKFQCALLRILQGSTHSGPVLTPTEALIAIHRIDPEREGIPLKK
VTDACNACFEQREIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPSLVDFIMEILS
RLVSKQIWKYPKLWVGFVKCAILTRPQSFGVLLQLPPAQLENALGRTPALRAPLVAHASQ
AHIKSSLPRSVLTVLGIESDAQVSSQAPPNQSQTGDIDNSDKEAGTEKSRDSSVVS
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatgatgtctccgatttccagagaaaggataacgagtttactcaatgctgcc
aagttcgcttccgacgttccatcgaagcttcatagcttacgccggctcaaagatgagctc
tctggcgctggcggtcctttactcaaagaattcctccctactctcatcgacctcgtttcc
gatcggtttagtccagttcgtaaattaaccattcagatggttggttgtattggattcgaa
catggagaattgttacctgatatcatacctgtgttgatctctgccttgaaggatgatacc
ccagctgttgctcgacaagcaatcacttgtggaattggtatatttcggtgtactctagtc
aaagttgcaatccagggcttgttttcaagtcaattggatggttctcttgaatcagcatgg
gccttgatgctgaagtttagggaggagatatacacaatggcatttcagcctgcaagtgat
ggaagaaaattgcttgcgctgaagtttgtggaatctgtcgtgctactttacacacctgat
cctagtgtcggttcggagccaccacctgctttggacattaaagggaagtttgaacaattc
aatgtatcgtggcttcgcggaggtcatccagttctagatattggggatttgtctgttaaa
gcaagccaaagtttgggtttattgcttgatcagcttagatctcctgcagtgaagtcaatt
actaacttgatgatcattgtggtgattaaatgtctttcagaaattgcgactaaaaggcca
gctttttacggtcgtatcctgccagttctacttagcctgagtccttcaagctctgacggc
aataagatgcatgtttctggggtataccgtgctttgaagatagccttcatttcttgcttg
cattgtacacacccaggagctgcaccgtggcgggatcgactagaaggtgcactccgagaa
aagagagcaggagttcaggcagaaccagttgtaagccaagattcccagaataatggggac
acagagttgaaggatgtttcatcgatcttagaggattcaaagccttcaattaaatcatct
gctgggacaaagagatcaggggtggagcacaatgctgaactgatagatgataatctctct
aagaagcgcatgcgatcggcgcctatcgtctccaaggcaccaaagcaagagccaagtggg
aaccaggagagagtttcagctgggggttccacaacaaccagatctgatggagataatgtt
aatttgcaaccacttgttgcaatgtttggtacattagttgcccagggtgaaaaggctgca
gcgtctttagatattttaatctctagcatatcagctgacttgctagctgatgttgtgatg
gctaatatgagaaatctaccttcaaatcagccaaaagttgttgatgatgaagagccacct
ctgaagccagagatcgaatctgattttagacgattatcattactgttgacagacactatt
tcccagtccagtatgttagcagaaaaagatgagagagctgatcaaagtttggtctcgatc
gagccagagctgcaaaaaattaaagggggagaagagcacctcgatcctgtcactactaat
gttacatctgatgccctaaattgtgcaagcgaagaagcaccagaatatgtaactgagcct
ctttcttctacaaagagtacccctctactaatcgaaaatgatgtctcatccttgcaatgt
gatgtcgctgacattgagaaaactgaggattccatacctggtctagattctgtagctctc
aaagatgaagcatcagagcttgtagctgtttcagctggtccaactgaagttgaagatggt
actcaagatcaagggtctagtgtagttaggtcatctttggaagtagttccatcaaattca
actgataggtcggaggagcttagtccaaaagcagctgtaacagatgtaaccagcatgaac
tcatcaacagctacttctattgggctttctccgcagttgcttctacccaaaatatctgct
ccagtcatcaacctctctgaagaagagaaggacaatttacagaagtcagctttcactcgt
gtcattgatgcttacaagcaaatcacaattgctggaggttctcaagtccggttttctctt
cttgcctatttaggtgttgagtttccttcggagctaaacccttggaaatttctacaaaca
catatattgtccgattatatgaatcttgaggggcacgagttgacattgcgtgtcctctac
aggttgtatgggcatgcagaagaagaccaggatttcttttcttcaacagctgcagcatcc
gtatatgaaacatttctacttacagtggcagaaacacttagagattcttttccagcttct
gacaaatctctaagtagattgcttggtgaagctcctcacttaccaaattctactctcaag
ttgttagagagcttctgttgtcctggtagttgtgaaaaggatgagaaggagttgcatagt
ggagatcgagtcactcaaggcctcagtactgtgtggaacctgattatgctgagacctcta
atgagagatgcttgtctcaaaattgctttacagagtgctgttcatcacttggaagaggtg
cgcatgaaggcaatacggctggttgccaacaagctttatcctctgacatccatctctcaa
caaatagaactctttgccaatgaaatgttgatgtcagtttcaactgttgatcataaagca
gactcaaatggtgatggatctgatcctgcattgcagaaggattctggttctgaaaagtcc
tcggaagaaggaccatcattttctatctctaaccctcttcagtcatccacttctggaagc
aaatcaccattttctattgctgagggtcagcgacgcatatcgctctattttgcactgtgt
actaagaagcactcactctttggccaaatatttgttgtatatagtggtgcatccgaggct
gtacagcaggcaatacatcaacaaatccatatgctagttcggacaattggttcttcatct
gagttacttgagataatatcagatccacatagtggaagtgaaaaactattgatacaggtt
ttgcaaacgttgactgaggggatagttccttccttacagttgataactaccatcaggaat
ctatatgagactaaagtaaaggatgttgagctccttattatgatacttcctttcctgtca
aaagatgaggttttacttctttttccacatgttgtgaatactccattggataaattccaa
tgcgctctccttcgtattctacagggatcaactcactcaggtccagtgctaactcctact
gaagcattaattgctatccataggattgatcctgaaagagaaggcattccattaaagaag
gtcacagatgcatgcaatgcttgttttgagcagagagagatattcacgcagcaagttctt
gcgaaggtcttgaaccaattggttgaacagattcctcttcctttgttgttcatgcggaca
gtattacaagctattggtgcttttccatctctggtggatttcattatggagatcctctct
cgtcttgttagcaagcagatatggaaatatccaaagctgtgggtaggatttgtgaagtgt
gccattttgacccggccacaatcttttggagtgcttcttcagctacctccagctcagctt
gaaaatgcattgggtagaacgcctgctctcagagctcctttagttgcacatgcaagccaa
gcacacataaaatcttcacttccaaggtctgtcttaacggttcttggaattgaatcggat
gctcaagtttcaagtcaggcacctcccaaccagtctcagacaggtgatattgacaattct
gataaagaagcaggcactgaaaaatccagggactcatcagttgtcagttaa
DBGET
integrated database retrieval system
