Solanum verrucosum: 125817189
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Entry
125817189 CDS
T11474
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sver Solanum verrucosum
Pathway
sver03013
Nucleocytoplasmic transport
sver03015
mRNA surveillance pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125817189
09122 Translation
03013 Nucleocytoplasmic transport
125817189
03015 mRNA surveillance pathway
125817189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125817189
03041 Spliceosome [BR:
sver03041
]
125817189
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125817189
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125817189
Spliceosome [BR:
sver03041
]
Complex C
Other components
EJC/TREX
125817189
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125817189
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
125817189
NCBI-ProteinID:
XP_049352691
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKIPDSATKVNGESAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILAL
ARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLMECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaacaaggagaacgatgcttatgaggaggagcttctcgactatgaagaagat
gacgaaaaaattcctgattccgccacaaaagtcaacggcgaatcggccaaaaagggttat
gttggaattcacagttcaggtttcagagactttcttctaaagccagagttgctgcgtgct
atcgttgattctgggtttgagcatccgtccgaagtgcaacacgagtgcattccacaagct
attctgggaatggatgtcatttgccaagctaaatctggaatgggaaaaaccgctgttttt
gtcctttcaactctgcaacagattgaaccggttgctggtcaggttgctgccctggttcta
tgtcacactagggaattagcttatcagatctgtcatgagtttgagaggttcagcacttat
ctgcctgatatcaaggttgctgttttctatggtggtgtcaacatcaagctccacaaagag
ctgctaaagaatgaatgccctcatattgttgttggaactcctggaagaatacttgcattg
gcaagagataaggacctgtctttgaggaatgtgaggcattttatactagatgaatgtgac
aagatgcttgaatcgcttgacatgaggagagacgtgcaagaaatcttcaagatgactcct
catgacaaacaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtttgc
aagaaattcatgcaagatccaatggaaatttatgttgacgatgaggccaagttgaccctg
catggacttgtacagcactacatcaaattgagtgagacggagaaaaaccggaagctgaat
gacctattggatgctttggacttcaaccaagttgtaatttttgtcaagagtgtcagcaga
gcagcagagttgaacaagttacttatggagtgtaattttccatctatctgcatccactct
ggcatgagccaagaagaaagactgacacgctacaagggtttcaaggaagggcacaagaga
attcttgtggcaactgatttggttggtagaggcatagacattgaaagggtgaacattgtt
attaactatgacatgccagattctgcagatacttatcttcacagagtgggaagagctggt
agattcggaactaaagggcttgccataacttttgtgtcatctgcatcagattctgaagtt
cttaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagattgat
acttctacatatatgccatcttaa
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