Solanum verrucosum: 125818978
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Entry
125818978 CDS
T11474
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125818978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125818978
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125818978
Spliceosome [BR:
sver03041
]
Complex C
Other components
Step II factors
125818978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
KH_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
Rcat_RNF216
AAA_22
AAA_19
zf-C3HC4_2
zf-RING_UBOX
ResIII
NAT10_TcmA_helicase
ABC_tran
DUF8146
SLFN-g3_helicase
Arc_MA
AAA_30
AAA_29
KH_Vigilin
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
125818978
NCBI-ProteinID:
XP_049354444
LinkDB
All DBs
Position
Unknown
AA seq
1729 aa
AA seq
DB search
MHDSSSCNRRFPAPAIYHEHSYRQSNNRPCRPGYYSSSYELDRPPGHSHKSPNFVIQLRS
GNRRINRYALDDLIEKLPFAPRSSFVFSKGFLSGSLMYDQWSETLEVIVKLWRMRLSGSH
SFTPWVKRNVEVPSDEDELKARVKMVFLEELKGLLVEGELLQKWEKKLELLRDEICELSR
LLKNRNNLRVCNEFLKKREGLEKESDLIRKRIEEFKRGIECIIQQLEETSLEEEEGGSRV
FKIGTVFDWSKMHCLMMRECRRLDDGLPIFAFRQQILRQIHYQQVTVLIGETGAGKSTQL
VQFLADCGVTGNGSIVCTQPRKLAANSLAQRVKQESEGCYEDTSIICYPSYSSGHKFDSK
VVFMTDHCLLQHYMVDKTLSKISCIIVDEAHERSLDTDLLLALIKNLLLQRLDLRLVIMS
ATADAAQLADYFFGCGTFHVAGRTFPVDIEYVPCESTGCLGVGPISSYVYDVVKMVTEIH
ETEGEGTILAFLTSQIEVEWACEKFQTLSAISLPLHGKLSYEEQHRVFLSYPGKRKVIFT
TNVAETSLTIPGVKYVVDSGMVKESRFEPGTCMNILRICKVSQSSAKQRAGRAGRTGPGR
CYRLYSESDFEGMSHHQEPEIRKVHLGVAVLRILALGIKNVHDFDFVDAPSPKAIEMATR
NLVQLGAVWKKDDAYELTIEGHKIIKLGIEPRLGKLILSCFNQHLSREGVVLAAVMASSS
SIFCRVGSEGDKLKSDCLKVQFCHPNGDLFTLLSVYKEWEAVPKEGKNAWCWDNSINAKS
MRRCQETVQELEACLKSELNIIVASYWHWDPQMHTEHDETLKRIILSSLAENVAMYSGYD
QLGYEVALSEKYIQLHPSCSLLNFDRRPTWVVFGEILSAANEYLVCVTAFEFSSLSALSP
SPLFNFLVMDAQKLEKKVLTGFGSMLLKRFCGKSNSSVNNLVSRIRTKYTDERIGIQVNV
GKNEVLLYASSSDMESVLGQVNDALEYESKLLQNECLEKCLFSGGSAASASVALFGAGAI
VKHLELKKRILAVDIFHSNTKAVDDKELLMFLERNTSGDICAVHKSSGTGHDNEENRWGR
VTFLSPDAAKQAMLLNQLECSGGFLKVVPSRSVFCNDQKQFSSVLRTRVNWPRRCCNGVA
IVKCEPNDVGFMVKDFSVVMIGGNTIRSKPSNKYSDSIVISGLNTDHSEAEVLEVLSGVT
DGKILDFFFVRGSAVENPPVAACEEALRREISPFMPKNVQSIRVQVFQPEPKDTYMRASI
MFDGSFHLEAAKALEHIDGKVLSGCLPWQKIRCQQQFHSSVSCPAPVYHVIRNQLDSLLP
CLQRRNGVECNLERNENGSYRVKIAASATKIVAELRRPLEQLMKGKIVDHVGISLTVVQL
LFSREGNNIMKMVQQETGTYILFDRHSLSVRIFGSSDKIEMAERKFVNSLLALHESKQLE
VHLRGGLLPLDLMKRVVQSFGPDLSGLKLKVPDAEFSLNTKRHCISVKGTKDMKQKVEEI
ISEIAQSGLPSRMMDDETDCPICLCELEDAYRLEGCTHTFCRSCLLEQCESAIRSREGFP
LCCMHKGCGAHILVSDLRSLLSSDKLEELFRASLGAFVAASAGLYRFCPSPDCPSVYHVT
ESGEVGAPFVCGACYVETCTSCHLEYHPYISCEKYKEFKNNPDFSLEEWAKGKENVKKCP
VCGFTIEKVDGCNHIECKCGKHVCWVCLVFFSSSDDCYNHLRSLHQAIM
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgcatgattcttcctcctgcaatcgccggttcccggctccggcgatatatcacgagcac
agctatcgtcagtcaaataaccggccatgtcgtccgggttattattcttcgagttacgag
cttgatcgaccgccaggacattcgcacaagtcgccgaatttcgtaatccagcttcgttcc
ggtaaccggagaatcaaccggtacgcattagatgatctaattgagaaattaccgtttgcc
cctcgaagttcgtttgtttttagcaaagggttcctttctgggtcactgatgtatgatcaa
tggagcgaaacgcttgaagtgattgtgaaattatggagaatgaggctttcaggcagtcat
tcgtttaccccatgggttaaacgaaacgttgaggttccatctgatgaggatgaattaaaa
gctagggtaaaaatggtatttttggaggagttgaaagggttgttagtagagggtgaattg
ttacaaaagtgggagaaaaaattggaattgttgcgcgatgaaatttgtgaattgtcgaga
ttactgaagaataggaataatttgagggtgtgtaatgagtttctgaagaaaagggaaggt
cttgagaaggagagtgatttgataaggaagaggatagaggagtttaaaagaggaattgaa
tgtattattcaacagttggaggagacgagtttagaggaggaggagggtggttcaagggtg
tttaagattgggacagtgtttgattggagtaaaatgcattgtttgatgatgagggagtgt
cgcaggcttgatgatggcttgccaattttcgctttccggcagcagatactgaggcaaata
cattatcaacaggtgactgtcttaattggcgaaactggagcaggaaaaagtacgcaattg
gttcaattccttgctgattgtggggtaactggtaatgggtctatagtttgcactcaacct
cggaaacttgctgcgaattctttggcacaaagggtgaaacaggaaagtgagggatgttac
gaagatacctcgatcatctgctatccgtcatattcatctggtcataagtttgattcaaaa
gtagtatttatgacggatcattgccttctacagcactatatggtcgataagactttgtcc
aagatttcatgtatcatagttgatgaggcacatgaaagaagcctagacactgatctactt
ttagcattgataaagaatcttctccttcagaggcttgatctgaggcttgttattatgtct
gccacagctgatgcagcccagcttgcggattacttctttggctgcggaacattccacgtg
gctggtagaacttttccggttgatattgaatatgttccctgtgaatccactggatgtctt
ggtgttggcccaatctcctcctatgtgtatgatgttgtcaagatggtgactgaaatccat
gaaaccgagggagagggaacaattctagctttcttgacttctcagattgaagttgagtgg
gcttgtgagaagtttcaaacattgtcagctatttctttacctttacatggcaaactatcc
tatgaagagcagcatagagtttttctcagctatccgggaaagagaaaggtaatattcact
acaaatgttgctgagacatcattgacaattccaggggttaaatatgttgttgattctggc
atggtcaaagaaagcaggtttgagcctggcacttgcatgaatattctcaggatatgcaaa
gtcagccagagctcagctaagcagcgggctggccgtgctgggagaactggaccaggaaga
tgttatcgactgtactcagaaagtgattttgaaggtatgtctcatcatcaggaacctgaa
attcgcaaggttcatcttggtgttgcagtgctgaggattcttgccttgggcatcaagaat
gtgcacgattttgattttgttgacgcacctagccctaaagctattgagatggccaccaga
aatctggtacagttaggagctgtttggaaaaaagacgatgcttatgaattaactatagaa
gggcacaaaataattaagttgggtattgaacctcggttaggcaaattgatcctcagttgt
tttaatcaacatttgagtagagaaggtgttgttcttgctgctgttatggctagttccagc
agcatcttttgtagggttggttctgaaggagacaagctaaaatccgattgcttgaaggtg
caattttgccatccaaatggtgatctcttcactttactttctgtttacaaggaatgggag
gctgtgcctaaggaaggaaagaatgcctggtgttgggataatagcatcaatgccaaatcc
atgagaagatgccaggagactgtgcaagaattggaagcttgccttaagagcgaacttaat
atcattgttgcaagctactggcattgggatcctcagatgcataccgagcatgatgaaact
ttgaaaagaataatactttcttcacttgcagagaatgttgctatgtattctggatatgat
caactaggttatgaggttgcactcagtgaaaagtacatccaactacatccgtcctgttcg
ctgttaaattttgatcgacgaccaacctgggtagtgtttggtgaaatcctttctgcagct
aatgagtatctggtctgtgttactgcatttgagtttagttctctttctgctcttagtcct
tccccgttgtttaattttctggtgatggatgcccaaaagctggaaaaaaaagttttgaca
ggtttcgggagcatgctattgaaaagattctgtggaaaatctaacagtagtgtcaataac
cttgtttcacgcattagaactaaatatacggatgaaaggattggcattcaagttaatgtt
ggtaagaatgaggttctgttatatgcttcatccagtgacatggagagtgttttgggtcaa
gtgaatgatgcactagagtatgaaagcaagttgttgcagaatgaatgcttggagaaatgc
ctattcagtggtggatcggctgcatcggcctcagttgccctctttggagctggtgcaatt
gttaaacatttggagcttaagaagagaatcttggctgttgacatatttcattcaaataca
aaagcagttgatgataaggaactgctgatgtttttggagagaaacacatcaggtgatatt
tgtgcagtgcacaagtcctcaggtactggccacgacaatgaggagaacagatggggcagg
gtaacatttctttcccctgatgctgctaaacaagctatgttgttgaatcagctagaatgt
agtggtggctttctaaaagttgttccttcaaggagtgtattttgtaatgatcaaaagcag
ttctcctctgtcctcagaactagagtaaattggcctcgtagatgctgtaacggtgtagct
attgtaaaatgtgagccaaatgatgttggttttatggtaaaagatttctctgtcgtaatg
ataggtggaaacaccatccgctcaaagccaagcaataagtactctgacagcatagtaata
tcaggacttaataccgatcattctgaggcagaggtactcgaggttttgagtggagtaaca
gatgggaaaattctagattttttctttgtgagaggaagtgctgtggaaaatcctccagtt
gcagcttgtgaagaagcacttaggagagaaatctcccccttcatgcctaaaaatgtccag
tctattcgtgttcaggtcttccaaccagaaccaaaggacacttacatgcgagcatctatc
atgtttgatggaagttttcatcttgaagcagctaaggctttggagcatattgatggcaag
gttttatctggatgtcttccctggcagaagataagatgtcagcaacagttccacagctct
gtttcctgtcctgcacctgtttaccatgttattaggaaccagctggattctttactccca
tgcctccagcgaagaaatggtgtggagtgcaatctggagagaaatgagaatggttcttat
agggtaaaaatagctgcaagtgctacaaagattgtggcagaactgagaaggccattggag
caactgatgaaaggcaagattgtggatcatgtgggaatttctctaactgttgttcaactt
ctattttctagggaagggaataatatcatgaagatggttcagcaggaaacaggaacctat
attctttttgacaggcatagcctttctgttagaatctttggttcctccgacaagattgag
atggctgagcggaagtttgttaactcccttctggcactacatgaaagcaagcagcttgaa
gtgcatcttcgtggaggacttttgcctcttgacctgatgaaaagagttgttcagagtttt
ggaccagatcttagtggtctcaaactaaaggtgcccgatgcagaattctctctgaacacc
aagcgccattgcatctctgtcaaaggtaccaaagacatgaagcaaaaagttgaggagata
atttccgaaattgctcaaagtggtcttccaagtagaatgatggacgatgagactgactgc
cccatttgcttgtgtgaactggaggatgcttacagacttgaaggttgtacccacaccttc
tgtcggtcgtgcttgctggagcagtgcgagtctgcaatcagaagccgggaaggtttcccg
ctatgctgtatgcataaaggttgtggggcacatattctggtttctgatttgaggtctctg
ttgtcgagtgataagttggaggaacttttcagggcttctttaggggcatttgtagcagca
agtgcgggtctctaccggttttgcccctcacctgactgcccttcagtttatcatgttact
gaatcaggagaagttggtgcaccttttgtctgtggtgcatgctatgtggagacatgtacg
agttgccacctggagtatcacccctacatctcatgcgagaagtacaaggagttcaagaac
aacccggatttctctctagaggaatgggccaaggggaaagagaatgtgaagaaatgtcct
gtttgcggattcacgatagagaaggtagatggctgcaatcatatcgagtgcaagtgcgga
aaacatgtttgctgggtttgtttggtattcttcagcagcagcgacgactgctataaccat
ttgaggtctcttcaccaggccattatgtga
DBGET
integrated database retrieval system
