Solanum verrucosum: 125819756
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Entry
125819756 CDS
T11474
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sver Solanum verrucosum
Pathway
sver03013
Nucleocytoplasmic transport
sver03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125819756
03015 mRNA surveillance pathway
125819756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125819756
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125819756
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125819756
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Thi4
Motif
Other DBs
NCBI-GeneID:
125819756
NCBI-ProteinID:
XP_049355156
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MADTSSTSTATSSTAASTTANAPESKSWADQADEIDQAEQSADQADEIDQAEQSSASNEE
GATAEINIGSLQVDESKRDNSTLSEPEDSSIQAVTSGDTMYKSAKRFEDLNLSPELLKGL
YVQMQFERPSKIQEISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQAL
CICPTRELAIQNMEVLLKMGKFTGITSELGIPADSANYIPISKRPPVTAQVVIGTPGTIN
KWVTARKLGMSCMKILVFDEADHMLAESGFQDDSIRIMKAIVKASVNCQVLLFSATFGEN
VKAFVTKIVQDLFVQDYNQMFVKKEELSLDSVKQYKVQCPDELSKIMVIKDRILELGQKV
GQTIIFVRTRNSASMLHKSLVDYGYEVTTIQGALRQEDRDKIIKEFKDGLTQILISTDLL
ARGFDQSQVNLVVNYDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNML
MSKIENHFNHQVAEIPSWNSEEDFENALKIAGLL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacttccagtacctccactgccaccagtagcaccgccgcttctactacggca
aacgcaccggaatccaaaagttgggcagaccaagccgacgagatcgatcaagctgagcag
tcggcagaccaagccgacgagatcgatcaagctgagcagtcttccgcttctaatgaagaa
ggcgctactgccgagataaatatcggatctctacaagtcgatgagtccaaaagagacaac
tccactctctctgagccggaagattccagcatacaagcggttacatctggcgatactatg
tacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggatta
tatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgatt
cttacgcctccgtacaagaatcttattgctcaggctcataatggttctggtaaaactact
tgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctc
tgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatgggg
aagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattcca
atttcaaaacggccgcctgttacggcacaagtagtgattggcacacctgggactataaac
aagtgggtgacggcaaggaaactgggcatgagttgcatgaaaattcttgtgtttgatgaa
gcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggca
atcgttaaagccagcgttaactgccaggtgcttctgttttctgcaacgtttggggaaaat
gtcaaagcatttgtgacaaaaattgttcaagatcttttcgtgcaagattacaaccaaatg
tttgtgaagaaagaagaactttcactggattcagtgaagcagtataaagtgcagtgtcca
gatgaactttcaaaaatcatggtgattaaagacagaatacttgaactaggacagaaggtg
gggcaaacaattatattcgttcgtaccagaaacagtgcaagtatgttgcataagtcattg
gttgactatggctatgaagtgacaacaattcaaggtgctcttaggcaagaagacagagac
aaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttctt
gctcgtggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgaga
catgagagtccaacagagccagatcatgaggtatacctgcatcggattggtagagcagga
cgttttggacgcaaaggtgcgatattcaacttgctgtgcagtgaccgagacaacatgcta
atgtcaaagattgagaaccatttcaaccatcaagtggctgagattccctcatggaatagt
gaagaagactttgaaaatgctctgaagatagctggcttgctgtaa
DBGET
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