Solanum verrucosum: 125820981
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Entry
125820981 CDS
T11474
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125820981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125820981
Spliceosome [BR:
sver03041
]
Complex B
Other components
Prp19-related factors
125820981
Complex C
125820981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_10
RRM_occluded
zf-CCCH_12
zf-CCCH_3
zf-CCCH
zf-CCCH_4
RRM_YTH1
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
125820981
NCBI-ProteinID:
XP_049356367
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGVDARIS
EQDLRDQFYAHGEIESIKMVLQRGCAFVTYTTREGAVKAAEELANKLVIKGLRLKLLWGR
PQAPKPDTELSDEARQQAAVTHSGLLPRAVISQQQNQLPPPPGTQEQPPQPMPYFNIPPM
LQQERAYYPSMDPQRMGAVVSSQDGASSSAAGSGPENKIGSEKHPQGQHYAYPPVPPPQG
QFYPPYYPPPPYGYMPPPPPPHYQQYPPPYQAARPPPPPLTGEQAAYQQKPQPAGAAAQQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgcttagagatgcagaagcagatggatgggagcgatctgattttccg
attatatgtgagtcttgtctcggggatagtccttatgtgcgaatgacgaaagcagattat
gacaaggagtgcaagatatgcacacgacccttcacagtgttcagatggagacctggtcgg
gatgcaagatacaaaaaatctgagatctgtcagacctgcagcaagttgaagaatgtttgt
caagtttgtcttttggatcttgagtatggtttgccagttcaggtccgagacactgctctc
agtatcaattctaatgatgcaattcccaagagtgacgttaatagagaatatttcgcagag
gagcatgaccgcagggcaagagcagggattgattatgaatcttcatatggaaaagtccgt
gcaaatgacactattttgaagctccaaagaacaactccatactacaagagaaatcgggca
catgtttgcagtttctatatacgtggtcaatgcacaagaggcttggagtgcccttatagg
cacgaaatgccagagactggggagttgtcacagcaaaacattaaggaccgttactatgga
gttaatgatcctgtggcgatgaagctacttaataaggcaggtgaaatgccttcattggag
ccccctgatgacgagagcattagaaccctctatgtgggtggtgttgatgcaagaatcagt
gagcaggacctaagggaccagttttacgcacatggagaaatcgagtccattaaaatggtg
ttgcagcgtggttgtgcttttgtaacctacactacaagagaaggtgcagtgaaggcggct
gaggaactagcgaacaagctagtgataaagggcttgagactgaagctgctctgggggaga
ccacaagctcctaaaccagacaccgaactgtctgatgaagcaaggcagcaggctgcagtg
actcacagtggattgttgcccagagctgtcatatcacaacaacagaaccagcttcctcca
cccccaggcactcaggaacaacccccacaaccgatgccatacttcaacattccgccaatg
cttcagcaggaaagagcatattatccgtcaatggatcctcaaaggatgggtgccgtagtt
tcatctcaggatggggcttctagttcagctgcagggtcagggcctgaaaacaagattggt
tccgagaaacacccacaaggacaacactatgcatatccaccggtgcctccacctcaaggt
caattttacccaccttactatccaccaccaccctatgggtatatgccaccaccaccgcct
ccacattatcagcagtatcccccgccttatcaagctgccagaccacctcccccacctctt
accggtgagcaagctgcttatcagcagaagcctcaaccagcaggagctgcagcacaacaa
ccttaa
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