Solanum verrucosum: 125821258
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Entry
125821258 CDS
T11474
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sver Solanum verrucosum
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sver03036
]
125821258
Chromosome and associated proteins [BR:
sver03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
125821258
microRNA pathway
RISC loading complex
125821258
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
Helicase_C
PAZ
DND1_DSRM
DEAD
ResIII
SNF2-rel_dom
Dicer_PBD
SLFN-g3_helicase
Flavi_DEAD
Cas3-like_C_2
TrbI_Ftype
Piwi
Motif
Other DBs
NCBI-GeneID:
125821258
NCBI-ProteinID:
XP_049356632
LinkDB
All DBs
Position
Unknown
AA seq
1918 aa
AA seq
DB search
MDGDGGGVSDKPSYWIDAYEDISCDDLIQDFVGSNTVPVAPLNQLGPDGSLDPCFFGGID
GILEKLKNGDGSVHSVDGNNSNVHSEALAAPGICKDNGPQAKKDVEHNKGDLGKKSLQEG
NGFSRHKERGCNDKEERNGKRARLGDDSYQRRGFDRPLARKRLRENDEINRVGRDQRKRR
EYHGGRGGRDRNWREGSGFWEWDKERKEMVYRVGSWEADRNREGKLPTERSREPSGAIEK
KDDKLKEQAPKEEARKYQLDVLEHARKNNTIAFLETGAGKTLIAILLMKSLCSDLQKKNK
KMLAVFLVPKVPLVYQQAEVIREQTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTA
QILLNILRHSIIKMEAINLLIMDECHHAVKKHPYSLVMSEFYHTTQKEKRPSVFGMTASP
VNLKGVSSQVDCAIKIRNLETKLDSVVFTIKDRKELEKHVPMPSEVVVEYDKAASLWSFH
EQIKQMESAVEEAALLSSRRSKWQFMGACDAGARGELRQVYGVSERTESDGAANLIQKLR
AINYALGELGQWCAYKVAHSFLTALQNDERASYQLDVKFQESYLDKVVSLLQCQLSEGAV
AQSNLNGEMDKGDNPNSDRPDEMEEGELLESHVVSVGEHVDVILGAAVADGKVTPKVQSL
IKILLKYQHTEDFRAIIFVERVVTALVLPKVFEELPSLSFINSSSLIGHNNSQEMRTGQM
QDTIAKFRDGRINLLVATSVAEEGLDIRQCNVVIRFDLAKTILAYIQSRGRARKPGSDYI
LMVERDNSSHEAFLRNARNSEETLRKEAIERTDISHLKDASKLISAEAPTDSVYQVESTG
AVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMKSHEKSGCPTEYSCRLQLPCNAPFETL
DGPVCSSMRLAQQAACLDACKKLHQMGAFTDMLLPDKGSGVESEKVEQDEEGVPIPGTSR
HREFYPEGVADILRGDWILSGKDSLVSSKVIHLYMYAIKCVNIGPSKDPFLTDVSEFAIL
FGNELDAEVLSMSMDLFIARTVVTKATLVFRGPIDVTEFQLASLKSFHVRMMSIVLDVDV
EPSTTPWDPAKAYLFAPVTGDESGDPIKDINWDHIKKITETGVWGNPLQRARPDVYLGTN
ERALGGDRREYGFAKLRHGMAVGLKSHPTYGVRGAIAHYDLVQASGLVPNRSSLDDVEVD
LNKDKIMMADCSLRAEDIVGRIVTAAHSGKRFYVDCIRSDMTAENSFPRKEGYLGPLEYS
SYAAYYKQKYGVDLVYKKQPLIRGRGVSYCKNLLSPRFEHSEEHEGELEEATDKTYYVFL
PPELCVLHPLPGSLVRGAQRLPSIMRRIESMLLAVQLKEMIGYPVPALKILEALTAASCQ
ETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQNALSKGIQS
YIQADRFSPSRWAAPGVLPVYDEDLNEDETSIFDHETAENGTVAAKALAGDEFEDEETEE
GELDNDSGSYRVLSSKTMADVVEALIGVYYVEGGKYAANHFMKWIGVEVDFDFNFKETEY
SIRSCSIPENVLKSVDFDALQGALNISFNDKGLLLEAITHASRPSSGVSCYQRLEFVGDA
VLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVMHSLHLHLRHASSALEKQIR
DFVNEVKNELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGCNTKSVWEVFQPLLH
PMVTPETLPMHPVRELQERCQQQAQGLEYKATRSGNMATVEVYVDGLQVGMAQNPQKKMA
QKLAARNALVVLKEREEAEAKKADDAKKKKNGNPSFTRQTLNDICLRKNWPMPLYRCVHE
GGPAHAKRFTYGVRVNISDKGSDKGFTDECIGEPMPSVKKAKDSAAALLLELLNRRYS
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atggatggtgatggtggtggagtctctgacaaaccttcttattggattgatgcttatgag
gacatctcatgtgatgatctcatccaagattttgttgggtcgaacactgtacccgttgcg
ccattgaatcaattgggtccggatgggagtcttgatccttgtttctttggtggtattgat
gggattcttgagaaattaaagaatggtgatggttctgtacattctgtggatggaaacaac
agtaatgtacatagtgaagctttagctgcacctggaatttgtaaggacaatgggccacag
gctaaaaaggatgtggagcacaacaaaggtgatttggggaagaagtctttacaagaagga
aatggattttccaggcataaggaacgaggttgtaatgataaagaagagagaaatggaaaa
agggcgcggctaggtgatgatagctaccagaggagaggctttgatagacctttggctagg
aagagacttcgtgagaatgatgaaatcaatagagtagggagggatcaaagaaaaagaaga
gaatatcatggtggtcgtggtggaagagataggaactggagggaagggagtggcttttgg
gaatgggacaaagaaaggaaagagatggtctatcgtgtgggttcatgggaagctgatagg
aatcgagaggggaagttaccaactgagagaagccgtgaaccttctggagctattgagaag
aaagatgacaaattaaaggaacaagctcccaaggaggaagcacgcaagtatcagttggat
gtacttgagcatgccagaaagaacaatacaatcgcttttcttgaaacaggagcaggaaaa
acacttattgccatcctcctcatgaagagtctatgtagtgacttgcaaaagaagaacaag
aaaatgctggcagtttttctggttcctaaagttccacttgtatatcagcaagcagaagtt
attcgtgagcaaactggctatcaagttggccattattgtggtgaaatgggccaagatttt
tgggatgcacgaaggtggcagcgtgagtttgaaactaaacaggtcctggttatgactgct
cagattctcttgaacatattgaggcacagtataataaaaatggaagcaattaatctcctt
attatggatgaatgccaccatgctgtgaagaagcatccatattctttagtaatgtctgag
ttttatcatacaacacaaaaggagaaaaggccatctgtttttggcatgactgcttcacct
gttaacttgaagggtgtttccagccaagttgattgtgcaataaagattcgtaatttggag
actaaattagattctgtcgtctttaccataaaagaccgcaaggagctggagaaacacgtg
ccaatgccgtcagaagtagtagtcgagtatgataaagctgctagtctgtggtcttttcac
gaacaaataaaacaaatggaatcagcggttgaagaagctgctctgttaagctccagaaga
agtaaatggcaatttatgggggcttgtgatgctggagctagaggagagctgcgccaagtc
tatggtgtttctgaaagaactgaaagtgatggggctgctaatctaattcaaaagttgagg
gctatcaactatgctcttggtgaactgggacagtggtgtgcctataaggtagcacattct
tttttaacagctctacaaaatgatgaaagggcaagctaccagcttgatgtcaagttccaa
gaatcctacctggataaggttgtctctctcttgcaatgtcagttatcagagggagccgta
gcacaaagtaacttgaatggagagatggataaaggtgacaatccaaatagtgataggcct
gacgagatggaggagggcgagcttcttgaaagtcatgttgtatctgttggagagcatgta
gatgtgattctaggagctgcggtggctgatgggaaagtgacacctaaagttcaatcatta
attaagattcttctcaagtatcaacatactgaggattttcgtgctataatatttgttgaa
cgcgttgtgactgcattggttcttccaaaggtttttgaggagctcccttccctaagtttt
atcaattcatcaagtctaatcgggcataacaatagtcaagaaatgcgaacaggtcaaatg
caggacacaatagccaaatttcgagatggtcgtattaatttgttagtcgctactagtgta
gctgaggaaggccttgacatccggcagtgcaatgttgtcattcggtttgatctggccaaa
actattttggcgtatatccagtctaggggccgtgcccgtaagcctggatcagattatatt
ttgatggttgagagagataattcatcacatgaagcatttctgaggaatgccagaaacagt
gaagaaacgttgcggaaagaagcaattgagcggactgatattagtcatctcaaagatgcc
tccaagttgatctctgcagaggcaccaacagattcagtttatcaggtggagtccactgga
gctgttgtgagcttaaattctgctgttgggctgatccacttttattgctcccaattacca
agtgacaggtactcgattctccgtcctgagtttataatgaagagtcacgagaagtcaggt
tgcccaactgaatattcatgcaggcttcaactgccctgcaatgcaccttttgagacactt
gatggccctgtatgcagctcaatgcgccttgcccagcaggctgcttgcttggatgcttgc
aagaagctccaccagatgggggcatttacggacatgctcttgcctgacaagggaagtggg
gtggagtcagagaaagttgaacaggatgaagaaggtgttccaattcctggaacttccagg
cacagggaattttatcctgaaggtgtagctgatattctgaggggtgattggattttgtcg
ggaaaggattctcttgtcagctcaaaggtcattcatctttatatgtatgccatcaaatgt
gtgaatattggcccctcgaaggacccattcttaactgatgtgtcagagtttgcaatactg
tttggcaatgagctggatgcagaggtattatcgatgtcaatggatttatttattgctcga
accgtagtaacaaaggcgactcttgtcttcagagggccaatagatgttacagagtttcag
ttggcgtcccttaagagctttcatgtaagaatgatgagcattgttttggatgttgatgtt
gagccgtccaccactccatgggaccctgcaaaggcatatctatttgcccctgttactggt
gatgaatctggagatcctataaaagatatcaactgggatcatattaaaaaaattactgaa
actggtgtatggggaaatcctcttcagagagctcgcccagatgtatatcttggtaccaat
gagcgtgctcttggtggagacagaagagaatatggctttgcgaaattgcgacatggcatg
gccgtcggactgaagtctcatcctacatatggtgttagaggtgctatagcacactatgat
ctggtccaagcatctggtttggtccctaaccggagtagccttgatgatgttgaagttgat
ttgaataaagacaagataatgatggctgattgttctcttagagccgaagatattgtagga
agaattgtcactgcagctcactctggaaagagattttatgttgattgcattcgtagtgat
atgactgcagagaactcatttccaaggaaagaaggttacctaggtcctcttgagtacagc
agttatgctgcttattataagcaaaagtatggagttgatttggtctataaaaagcagcct
ctaataagagggcgcggtgtttcatattgcaaaaaccttctgtcaccacgatttgaacat
tcagaagaacatgagggtgaactcgaagaggcaactgacaaaacgtattatgttttcctc
cctcctgagctctgtgttttgcatccacttcctggatcccttgttcggggtgctcagaga
ttgccctcgatcatgaggaggattgagagcatgctgcttgctgttcagcttaaggaaatg
atcggttaccctgtcccagcactgaagatcttggaagcattgaccgccgcttcttgccag
gagactttctgctatgaaagagccgaacttcttggagatgcatatctgaaatgggttgtt
agtcggtaccttttccttaagtatccccagaaacatgaaggccaactcaccaggatgaga
cagcaaatggtaagcaacatggtgctgtatcaaaatgccttgagtaagggaatccagtca
tacatccaagcagatcgattttctccatcgagatgggcagctcctggggtgttgcctgtc
tatgacgaggacctcaatgaggatgaaacatcaatatttgatcatgaaacagcagaaaat
ggtactgtagcagcaaaggctctagctggtgatgagtttgaagatgaggaaactgaagaa
ggtgagcttgataatgattcagggtcatatcgtgtactctctagcaagactatggctgat
gttgtggaagcactgattggagtatattacgttgagggtggaaagtatgctgcaaaccac
ttcatgaaatggattggggttgaggttgatttcgatttcaatttcaaagagacagaatac
tctattaggtcttgtagcattcctgagaatgtactcaagagtgttgactttgatgcatta
caaggtgctttgaacatcagcttcaatgataaaggcctactgctagaagcaattacccat
gcttcacgcccatcttctggggtctcctgttatcaaagactggagtttgtgggtgatgca
gtattagatcatctcatcacgaggcacttgttctttacatacacagatcttcccccaggc
cgattgactgacttgcgagctgcggctgtcaacaatgaaaattttgcacgtgttgctgtt
atgcacagtcttcatttacaccttcgtcatgcatccagtgctctagaaaaacagattcgt
gactttgtgaatgaggttaaaaatgaactatcaaaaccaggtttcaactcctttggcttg
ggagattgcaaagctcctaaagttcttggtgatattgttgaatcaattgctggggctatt
tttctagacagtgggtgtaatactaaatctgtatgggaggtttttcaaccactgttgcat
ccaatggttacaccagaaacactgcccatgcatccagttcgagaattgcaagaacgttgt
caacaacaagctcaaggcttagagtacaaagcaactcgaagtgggaatatggctacagtt
gaagtatatgtggatggtcttcaggttggaatggcgcagaatcctcagaagaaaatggca
cagaagttggcggccaggaatgcccttgttgtgttgaaagagagggaggaagctgaagct
aagaaggctgatgatgcaaagaaaaagaagaatggcaacccgagttttactagacagaca
ctaaatgatatatgcttacgcaaaaattggcctatgccactgtatcgatgtgtgcacgag
ggtggtccagcacatgcaaagaggtttacatatggagtacgcgtaaatatttcagacaaa
ggatcagacaaaggatttacagatgaatgtatcggggaacctatgccgagtgtaaagaaa
gccaaggattccgcagcagctcttctgttggaactcttaaatagacggtactcataa
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integrated database retrieval system
