Solanum verrucosum: 125822003
Help
Entry
125822003 CDS
T11474
Name
(RefSeq) vacuolar sorting protein 39-like isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
sver Solanum verrucosum
Pathway
sver04142
Lysosome biogenesis
sver04145
Phagocytosis
sver04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
125822003
04142 Lysosome biogenesis
125822003
04148 Efferocytosis
125822003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sver04131
]
125822003
Membrane trafficking [BR:
sver04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
125822003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_19
TPR_WDR35
zf-HC5HC2H
TPR_MalT
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
125822003
NCBI-ProteinID:
XP_049357336
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MVHTAYDTFQLLDNSPSKIDAIESYRSNLLIACSDGSLRVYVPESSVSDQSDFHSETLEL
HQGPYVLERTLNEFSRRQMLAMEVLVSRELLLSLSESIVLHGLPNLETLSVITKAKGANV
YSWDDKKGLLCFGRQKRVCIYKHDGGSGFVEVKEFGVPDTVKSMSWCGENICLGIRREYK
ILNTTNGVLSEMFSSGRIAAPLVVALPPGELLLGKDNIGVLVNQNGKLIQEGRICWSEAP
AVVIIQKPYAIGLLGRHVEIRSLRVPYPLIQTVVLRNVRHLVRSNNTVIVALDNSVFGFF
PVPLGAQIVQLTASGNFEEALALCKLLPPEDSSLRSSKEQSIHMRYAHFLFENGSYEEAM
EHFVASQVEITYVLALYPSIIVPKSSCIPEPQKFADVADAPYLSRGSSGLSDDLDSPPSD
VFESDEMDIESKKMNHNTLMALIKYLQKKRYSVIEKATTEGTEEVVSDAVGDNFISYGTD
RSKKPTKGRIHIPITSIARDMAAILDTALLQALFLTGQFSAATDFLKALNYCDVKICDAF
LQERSQYACQIELYRCNSMHHEALKLLHQLVEESKSEQTPVELLTKFKPDMIIEYLKPLC
ATDPMLVLEFSLPVLESCPMQTIELFLSGNIPADLVNSYLKQHAPDMQATYLELMLSMNE
NSISGNLQNEMVQIYLSEVLDFHAEHNSQQKWDEKTCPPPRKKLLSALEGMSGYNPEVLL
KRLPPDALYEERAILLGKMNKHELSLSIYVHKLHVPELALSYCDRVYDSGLQQHSAKSYG
NIYQTLLQIYLNPTKTTKKFEKKITNLVSAQSPGIPKVGLVTTAKVKGGRSKKIAEIGGA
EDTRFSLSGTDSGRSDGDTEDAAKEGGSTIMLDQVLDILSRRWDRIHGAQALKLLPRDTK
LQNLLPFLGPLLRKSSEAYRNFSVIKSLRESENLQVKDELYNQRKAVLKITSNSMCSLCN
KKIGTSVFAVYPNGKTIVHFVCFRDSQNMKAVGRGSQLRKR
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacactgcctacgataccttccaactcctcgataattctccctccaaaatcgat
gccattgaatcataccgctcaaatttgctcatcgcatgttccgacggatcgctccgtgtt
tacgttccagaatcctccgtttctgaccaatctgatttccattctgaaaccttagagctt
catcaaggaccctatgtgcttgaaagaactctgaatgaattctccagaagacaaatgctg
gccatggaagtcctcgtctcacgagaacttctgctttccctctccgagtcaatcgtgtta
catgggttgcctaatttggagactttgtcagtgattactaaggctaaaggtgcaaatgta
tattcgtgggatgataaaaaagggttactttgcttcgggaggcaaaagagagtctgtatt
tacaaacacgacggggggagtggatttgtggaggtgaaagaatttggagttcctgacaca
gttaagtcgatgtcatggtgtggtgagaatatttgcttggggattagaagagagtacaag
atattgaataccacgaatggtgtattgtctgagatgttttcttcagggaggatcgccgca
cctcttgtggtggctcttccacctggagaacttcttttgggcaaggataatattggtgtc
ttagttaaccaaaatgggaagttgatccaagaagggaggatttgttggtctgaggctcct
gcagttgttattatccagaagccgtatgcaataggtcttttggggcgacatgttgagata
cgttctcttcgtgttccttatcctttgattcaaacagttgtccttcggaatgttcgtcat
cttgttcgaagcaacaatactgtgattgttgctcttgataattctgtttttggatttttt
cctgtgcctcttggtgcgcagattgtacaactaacagcatctggaaacttcgaggaagcc
ttggctttgtgcaaattgctaccaccagaagattcaagtcttagatcttcaaaggagcaa
tcaattcatatgagatatgcgcactttctatttgaaaatgggagctatgaagaagcaatg
gaacattttgtggcatctcaagttgaaatcacttatgtgctcgccttatatccatccatt
attgttccaaaatcatcttgcatacctgaaccacagaaatttgcagatgttgcagatgca
ccatatctctcccgaggctcttctggtctgtcagatgatctagattctccgccttcggat
gtatttgaatctgatgaaatggatatagagtccaagaaaatgaaccacaacactttgatg
gctctgattaagtatttgcagaaaaagagatacagtgtcattgagaaagccacaactgag
ggaactgaagaagtggtttcagatgctgttggagataatttcatttcttatggaactgac
cgatccaaaaaaccaaccaagggcagaattcatattcctatcacttccatcgctagggac
atggctgcaatactggacactgcacttcttcaagctctgtttttaactggacagttctct
gctgctacagattttctgaaagctctcaactactgtgatgtgaaaatatgcgatgcgttc
ctgcaagaaagaagccagtatgcttgtcagatagaactttatagatgcaattcaatgcat
catgaagcactgaaacttcttcatcaactagtagaagagtccaagtcagagcaaactcct
gtagagctcttaacgaagttcaagcctgatatgatcattgaatatctcaaacccctttgt
gcaactgaccccatgcttgtcctggagttctcattgcctgttcttgaaagctgtcctatg
caaaccattgagctatttttgtctggtaacattccagcagacttggtgaattcttactta
aagcagcatgctccagacatgcaggcaacatatctagaactcatgctttccatgaatgaa
aatagcatctcagggaatctgcagaatgaaatggtgcaaatttatctctcagaagtgctt
gattttcatgctgaacataattcccagcaaaagtgggatgagaaaacgtgtcctccacca
aggaaaaagctactgtctgctttggagggtatgtctggatataatccagaggtgttgctg
aagagacttccaccagatgctctgtatgaagaacgtgcaattcttttggggaaaatgaat
aaacatgaactttccctgtctatttatgtgcacaagcttcatgttcctgaacttgcactg
tcctattgtgaccgggtgtacgattcaggacttcaacaacattcagcaaaatcttacgga
aacatttaccagactctactgcaaatctatctaaatcctacgaagacaacaaaaaaattt
gagaagaaaattactaatctggtatcagctcagagccctgggattccaaaagttggttta
gtaactacagcaaaggtaaaaggaggccgctccaagaaaattgctgaaattgggggcgct
gaggacactcgattcagtctaagtggcacagacagtgggaggagtgatggagatacagaa
gatgctgccaaggaaggtggttctactattatgctagatcaggtacttgatattttgagc
agaaggtgggatcgaatccatggcgcccaagcgctgaaactgctgccaagggatactaag
ctacagaacttgcttccatttcttggacctcttctgaggaaatccagtgaagcatatcgg
aacttctcagtgataaaaagcttgagagaaagtgaaaacctacaggttaaagatgaactg
tataaccaaagaaaagcagttttgaagatcacaagcaatagcatgtgctctctttgcaac
aagaagattggcaccagtgtctttgcagtctatcctaatggtaagacaattgtgcacttt
gtttgctttagagattcacagaatatgaaggcagttggaagaggctctcagttgaggaaa
agatga
DBGET
integrated database retrieval system
