Solanum verrucosum: 125822123
Help
Entry
125822123 CDS
T11474
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sver Solanum verrucosum
Pathway
sver03013
Nucleocytoplasmic transport
sver03015
mRNA surveillance pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125822123
09122 Translation
03013 Nucleocytoplasmic transport
125822123
03015 mRNA surveillance pathway
125822123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125822123
03041 Spliceosome [BR:
sver03041
]
125822123
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125822123
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125822123
Spliceosome [BR:
sver03041
]
Complex C
Other components
EJC/TREX
125822123
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125822123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
125822123
NCBI-ProteinID:
XP_049357455
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MEDTKENDAYEEELLDYEEDDEKAPDSISGKINGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIEPVAGQVAAIV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILA
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQAIFKTTPHDKQVMMFSATLSKEIRPI
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVDCNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQQRFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggaagacacaaaggagaacgatgcttacgaggaggagcttcttgactacgaagaagat
gatgaaaaagcccctgattccatctccggcaaaattaatggcgagtccgccaagaagggt
tacgttggcattcacagttccggattcagagactttctgctaaagccagagctattgcgg
gctattgtggattcaggctttgagcatccttctgaagtgcaacatgaatgtattccgcaa
gcaattctaggcatggatgttctttgtcaagctaaatctggaatgggcaaaactgctgtt
tttgttctttcaacgctgcaacagattgaacctgttgctggtcaggttgctgccatagtt
ctatgtcacacaagggaattagcttatcagatctgtcatgaatttgagaggttcagcaca
tacttgcctgatatcaaggttgctgttttctatggtggtgtcaatatcaaacttcacaag
gagcttctaaagaatgaatgccctcatatagttgttggaactcctggaagaatacttgca
ttggctagagataaggacctgtctttgaggaatgtgaggcattttatactggatgaatgt
gacaaaatgcttgaatcacttgacatgagaagagatgtgcaggcaattttcaagacgact
cctcatgacaagcaagtaatgatgttttcagcaacactcagcaaagagattcgccccatt
tgcaagaaatttatgcaagatccaatggaaatatatgttgatgatgaggccaagttgacg
cttcatggacttgtacagcactacatcaaattgagcgaactggagaagaaccggaagctg
aatgacctgctggatgcgttggacttcaatcaagttgttatatttgtcaagagtgtaagc
agagcagcagagctgaataaattgcttgtcgactgcaattttccatctatctgcatccac
tctggaatgactcaggaagaaagattgactcgctataagggtttcaaggaggggcacaag
agaattcttgtggcaactgatttggttgggaggggcattgacattgaaagggtcaacatt
gttattaactatgacatgccagattctgcagatacttaccttcacagagtgggtagagct
ggtaggtttggaactaaaggccttgccatcacatttgtctcctctgcatcagattctgat
gttcttaatcaggttcagcagaggtttgaagtggatattaaagagcttcctgagcagatt
gatacttccacatacatgccatcatag
DBGET
integrated database retrieval system
