Solanum verrucosum: 125824573
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Entry
125824573 CDS
T11474
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
sver Solanum verrucosum
Pathway
sver03030
DNA replication
sver03410
Base excision repair
sver03420
Nucleotide excision repair
sver03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125824573
03410 Base excision repair
125824573
03420 Nucleotide excision repair
125824573
03430 Mismatch repair
125824573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sver03032
]
125824573
03400 DNA repair and recombination proteins [BR:
sver03400
]
125824573
DNA replication proteins [BR:
sver03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125824573
DNA repair and recombination proteins [BR:
sver03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125824573
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
PTCB-BRCT
Rad17
RCF1-5-like_lid
AAA_30
AAA_22
AAA_5
AAA_19
BRCT_2
AAA_assoc_2
RuvB_N
AAA_14
RsgA_GTPase
DNAX_ATPase_lid
nSTAND3
Gp44_lid
AAA_18
NTPase_1
AAA_17
AAA_16
PTHB1_hp
KTI12
NB-ARC
SurA_N
RNA_helicase
Zeta_toxin
Bro-N
AAA_33
TsaE
Motif
Other DBs
NCBI-GeneID:
125824573
NCBI-ProteinID:
XP_049359928
LinkDB
All DBs
Position
Unknown
AA seq
1017 aa
AA seq
DB search
MSDIRKWFMKQHDKGTGNGSMSKNSAAEKPSPTSPKPENLVQEGQETTNRRKTSKYFATD
KVKAKEEKVEEVSAKRKAQSAAGSSSANEKPPAAKKIHKAEDDDDFVPLVSTMGSRDVTP
SKKSVSGSGRGSAQKNVISDDSDDDLKNKKSDLKPGGRGRGGRAAKTSGKGVPLDESEDD
ASAVKDNKSGGRGRGGKGPSAAPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPD
CLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTTYLLCDEDVEGRKSSKAKEL
GTAFLTEDGLFELIRSSKKSKSATQPESKKSVDIIVSSGKRNSQNTSDGTGSTATKILAA
KQLAPSASPAKSSGSPAKSSAFPAKRKTQAKESLLPWTEKYRPKAIVDIIGNKSLVEQIQ
RWLESWDEHFLKAASKGKGKKLNDSGAKKAVLLSGMPGIGKTTSAKVVSQMLGFQTIEVN
ASDSRGKADSKIEKGISGSTANSIKELVSNESLSANIGRSHHQKTVLIMDEVDGMSAGDR
GGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLPIVFRKPTKQQMAKRLKQVANAE
GIQVNEIALEELAERVGGDMRMALNQLQYMSLSKSVIQYDDIRRRLLSSSKDEDISPFKA
VEKLFDFNAKNLKIDQRIDLSMSDPDLVPLLVQENYLNYKPSSAGKDDNDLKRMSLIAHA
ADSIANSDLINVQIRRYQQWQLSPVGCLSSCIIPASLLHGQRQTLEQGERNFNRFGGWLG
KNSTMGKNYRILEELHVHLLASRESYLGRANLRLDYFSLLGKKLTDPLKVLPKDEAVENV
VAFMDSYSISQEDFDNIVEISKFKGHLNLLDGVQPAVKAALTKAYNKGSKSRVIRTADLI
TLPGIKKAPKKRVAAMLEPLDEGVAEENDETLAEDEENSSETEDIADVGKKLQSDLQSLS
SRGIQVNMDLKGAGRSGGKTPSAGRGRGRGSSNSSASAESSGKRGGRGSGAAAKRKR
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatatcaggaaatggttcatgaagcagcatgacaaaggcacgggtaatgggagt
atgtccaagaatagtgcagcagaaaagccttctcccactagtccaaagccagaaaacctg
gtacaagaaggacaagagactaccaacagaaggaaaactagtaaatattttgctacagac
aaggtgaaggcaaaagaagaaaaagttgaggaagtgtcagcaaaaagaaaagctcaaagt
gctgctggaagttcatcagctaatgagaagccaccagctgcaaaaaaaattcacaaagct
gaggatgatgatgactttgtaccattggtatctacaatgggatccagagatgtcactccc
agcaaaaagtcggtaagtggctctggaaggggatctgcgcagaaaaatgtgatcagtgat
gatagtgacgatgatcttaagaacaaaaaatctgatctcaaacctggtggaagagggcgg
ggaggacgggcagctaagaccagtggaaagggtgtccctcttgatgaaagtgaagatgat
gcctcagctgtcaaggacaacaaatctggtggacgagggcgtggtggtaaaggaccatct
gcagcaccaagcggtggacgaggtagaggtggtggaggacggggaggtttcatgaacttt
ggtgaaagaaaagaccctcctcacaagggggaaaaggaagttcctgaaggtgccccagac
tgtttagctggtttgacttttgtaattagtggaactctcgacagtttagaaagagaagaa
gctgaggatttgattaaacgccatggtggtcgtgtcacaggatctgttagcaagaaaacg
acttatcttttatgtgatgaagacgtcgagggacggaaatcctctaaagccaaggagctc
ggaactgcatttctcactgaggatggtttgtttgaattgatccggtcatcgaaaaaatca
aaatcagctacacaacccgaatcaaagaaatctgtggacatcattgtttcttctggaaag
agaaattcacaaaatacaagtgatggaactggaagcactgccacaaagattctagctgcc
aaacaattggcacctagtgcatctcctgccaaaagtagtggatctcctgccaaaagtagt
gcatttcctgccaagaggaaaacccaagctaaagagtctttactaccatggacagaaaaa
tacaggcccaaagctattgtagacataataggaaacaagtcactggtggagcagattcag
cgttggctagagagctgggatgagcattttctaaaggcagctagtaagggtaaggggaaa
aaactgaatgactctggtgctaaaaaagcagttctgttgagtggtatgccgggtataggg
aagactacatcagcaaaagtggttagtcagatgctgggttttcaaaccatcgaggtaaat
gctagtgatagtcgtggaaaggctgactcaaaaattgagaaaggaattagtggaagtact
gctaattccataaaagaacttgttagcaatgaatctctaagtgctaatattggcagatca
caccatcagaagactgttctgattatggacgaggttgatggcatgtctgctggagataga
ggtggtgttgctgatcttattgctagcatcaagatctcgaaaattcctattatctgcatt
tgcaatgatcgctacagtcagaaattgaagagccttgtcaattattgcctaccaattgtc
ttccgtaaaccaactaagcagcagatggcaaagaggttaaagcaagtggcaaatgctgaa
ggcattcaagtcaatgagattgctcttgaggaattggcagaacgtgttggaggagatatg
cgtatggctctaaatcaattgcaatacatgagtctctccaagtctgtcatccaatacgat
gatataagacgccgccttctaagcagttcaaaggatgaagacatctcaccgttcaaagct
gtagaaaagctgtttgattttaatgccaagaacttgaaaatagatcaaagaattgaccta
agtatgagcgacccagatcttgtccctcttcttgtccaggagaactatctcaactacaaa
ccaagttctgctggcaaagatgataatgatttaaagcggatgagcctaattgcgcatgct
gctgactctattgcaaatagtgacttaataaatgtacagattcgaagataccagcagtgg
caactttctccagttggttgcctttcttcttgcataattcctgcttctttgttgcacgga
cagaggcagactcttgagcagggagagcgcaactttaacagatttggtggctggctagga
aagaactctacaatgggaaagaattaccggatcctggaggaattgcatgttcacctactc
gcatctcgtgaatcatatctgggaagggcaaacctgagacttgactacttttctcttctt
ggaaagaagttgacagatccattaaaagtgctgcctaaggatgaagctgtagagaatgtt
gttgcttttatggattcatactctataagccaggaggactttgataatattgtggagata
tcaaaattcaaggggcatctgaatcttctggacggtgtacagcctgctgtgaaggcggcg
ctgacgaaggcatacaacaaaggaagcaaatcacgtgtaattcgcacagcagatttaatt
acccttcctggaattaaaaaagctccaaaaaagcgcgttgcagcaatgctggagccacta
gatgaaggtgtagctgaagaaaatgatgaaacactggctgaagatgaagagaattcatca
gagacagaagacatagcagatgttgggaaaaaattgcagtcggatcttcagagtctcagt
tcgagagggatccaagtaaacatggacttgaagggtgccgggaggtcaggtggcaagacg
ccgtctgcagggagaggaagaggaagaggaagttctaatagcagtgcaagcgctgaatcc
tcaggtaagagaggtggacggggttctggagctgctgccaagagaaagaggtga
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