Solanum verrucosum: 125824872
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Entry
125824872 CDS
T11474
Name
(RefSeq) uncharacterized protein LOC125824872
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125824872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125824872
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125824872
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125824872
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
125824872
NCBI-ProteinID:
XP_049360180
LinkDB
All DBs
Position
Unknown
AA seq
2418 aa
AA seq
DB search
MIPFGSAASTQIRFLFQSLNGSNSDTVFHELRQYLAYGVEGSILLLRTCIDHLNVYGKDS
KNTQLDPVFASIFRCILEKPNFSTVFSESLKDTAISEEFLVNLSNAFHLAISEKIGVGLA
LSDSENVDVKKCGTNYCMGQIAELCSTNSSLDDAKQIQNVLLFLNQSEGLSKHVDLFMHL
LSLVQSKEAQFILTPLLSDELHEANFLRNLDFLNDDGEDDFDVLLADMEKEMSIADIMKE
LGYGCTASILQCKEMLSLFLPLTEVTVARILGMVVRTRSGIEDNLNMFSTFRTALGSISA
ADPSPLSSWNADVLIDAIKQLAPGLNWVTVLDNLDHEGFYIPDGAAFSFLMSIYKHACQD
PFPLGTICGSIWKNAEGQLSLLKYAVSVPPEVFTFAHSKRQLDCADAVYDHKIQNGHANH
AWLCLDLLEVLCQLAEIGYASSVRSILEHPLKHCPEVLLHGMAHINTAYNLLQHEVAAAA
FPVMLKNAAARGMILHLWHVNTSILCWGLVEALDVDLDNMHTVLDACQELKILSSVLDRI
PFAFGIRLAALASRKELLDLEKWLSNNLNTYKDTFYEACLKFLREIHLAALDDASNHFDP
PSALLTIYSETSSTFLKVLKSHSGLVSSRHLSEELDKLHITYMDANSRLKSVGGADSSTS
DGGGSDAIEAEANVYFHQMFSGQLSNDATVQMLSRFKESTEKREQAIFECMIGNLFEEYK
FLSKYPDRQLKIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFVFGILALEQ
FVDRLIEWPQYCNHILQISHLRVANSELVAFIERALARISLTHSESEVGHSPAVDQFHGP
ISSSPMNSEGQTFQVVGQSGLQQSMQGPSSSQLPLRQQSSIEERKPSAALSGYLKPALSP
AVQPATVPSSDNAGIHKPQGPSSTSAVLTSSPGFLRPSRAITSGRFGSALNIETLVAAAE
RRETPIEAPASEIQDKISFIINNLSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIE
PNFHDLYLKFLDKANSKSLFKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKI
TIGKNHVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILE
LLAEIYAMPNLKMNLKFDIEVLFKNLGVDLKEVVPSSLLKDRVREVEGNPDFSNKDAGGS
SQPQMVADAKSGIISSLNQVELPLEVASSHPSGPSRILTQYAAPLHLPSAPMTEDEKLAA
LGLSDQLPSAQGLLQGQSPFSVSQLPATASNIEQQVVVNPKLHALGLQLHFQSVLPIAMD
RAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLSGSLAHVTCK
EPLRGSISGQLRNLLQGLTIASDLLEQALQLVTNDNLDLGCAMIEQAATEKAIQTIDGEI
AQQLAIRRKQREGPGASFFDASPYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQ
NQSSQSSNAVTAVPSTSSSSVGVSRAYMSGTGQMNSNLYSSGLMNAVITAVPQPLEISEE
IDTSSQLNSASSPHLGMGDSVTSSSFETEATVEPFTSVSAPESHPVEPSSLAKESGASLQ
PSNATATSERVGNSISEPLLTTGDALDKYQIISEKLENLVSEEAEEAEIQALIAEVPVII
LKCISRDEAALAVAQKAFKGLYENATNSAHVGAHLAILSSIRDVSKLFVKELTSWVIYSD
EERKFNKDITVGLIRSELLNLAEYNVHMAKLLDAGRNKSATEFAVSLIQTLVISDSRVIS
ELQNLVDALAKIAARPGSPESLQQLVEIAKNPGANAAALSSVSFGKEDSNKQSRDKKIAV
TATGTREDYGVSECIEPDSASFREQVSMLFAEWYRICEIPGANDATHAHYILQLNQSGLL
KGDETSERFFRRLTELSVSHCLSSEVMSSTTQSHQAQPLSFLAIDIYAKLVFSILKFYPV
DQGSSKLLLLPKVLAVTVRFIQRDADEKKMIFNPRPYFRLFINWLVDLSSLDPVFDGANF
QVLTALANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQF
MEPFLRNAELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILS
AFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPF
LSELKQKLLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQSKTPHAQSMPSSVPFAV
FLVGAALDVFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQ
EQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCG
GPKPVDENVVSGGISDIH
NT seq
7257 nt
NT seq
+upstream
nt +downstream
nt
atgattcctttcggctccgctgcttctactcagattcggtttttgttccagagtttgaac
ggttctaattctgacactgttttccatgagctccgtcagtatctggcatatggagttgaa
gggagcatattgctgcttcggacctgcattgatcatctgaatgtttatgggaaagactcg
aagaacacacagctggatcctgtatttgcttccattttcagatgcatcttggagaagcca
aatttcagcactgttttttctgaatccctcaaggacactgcaatcagtgaggagttttta
gtgaatctatcaaatgctttccacttggcaatatctgaaaaaattggagttggccttgca
ttgtcagactcagaaaatgttgatgtcaagaaatgtggaaccaactattgcatgggccag
attgcagagttatgttccaccaactcttctttagatgatgccaagcaaattcagaatgtt
cttttgtttctgaatcaatctgaaggtctctctaagcatgtagacttgtttatgcatttg
ctatcactcgtccagtcaaaagaagcccagttcattttaactccattgctatctgacgaa
cttcatgaagctaattttttgaggaacttagatttcttaaatgacgacggtgaagatgat
tttgatgttcttttggcagatatggagaaagaaatgagtatagcagacataatgaaggaa
ttgggttatggatgcactgcttctatcttgcaatgcaaagaaatgttatccttatttttg
ccgctgactgaagtgactgttgctaggatacttggtatggttgtacgtacccgttcaggc
attgaggataaccttaacatgttctcaacgttccgtactgctcttggtagcatctctgca
gctgatccatcaccattgagttcctggaatgccgacgtccttattgatgcaattaagcaa
cttgctcctggacttaactgggtaactgttttagataacctagatcatgagggtttctat
attcccgatggggcagccttttcctttttgatgtccatttacaaacatgcctgtcaggat
ccttttcctcttggaactatttgtggttctatctggaagaatgctgagggtcagctttcc
ttactcaagtatgctgtgtcagtgcctcctgaagtatttaccttcgcacattctaagagg
caactggattgcgctgatgcagtgtatgaccataaaatccaaaatggacatgcaaatcac
gcatggttgtgtcttgaccttctcgaagttctttgccagctggctgagataggttatgca
agctctgtgcggtccatcctggagcaccctctgaagcactgtccagaagtcttgcttcat
gggatggcccacattaatactgcatataatctcctccagcatgaagttgccgctgctgct
tttcctgttatgctaaaaaatgctgctgctaggggtatgattcttcatttgtggcatgtt
aatactagcatcttgtgttggggtcttgtagaagcattggacgttgatctggacaacatg
cacacagttttggatgcctgtcaagagcttaagattctgtcatcagtactagataggata
ccttttgctttcggcatcagacttgctgcccttgcttcccgcaaagaactcttggattta
gagaaatggttgagcaataacttaaacacatataaagataccttctatgaggcatgccta
aagttcttgagggaaatacatctcgctgctctagatgatgcttccaaccattttgatccc
cccagtgctcttttgactatttattcagaaacttcttctacctttttaaaggtccttaag
tctcattctggcttagtttcttcccgccacttatctgaggagctggacaagttgcacata
acatacatggatgctaattcaaggcttaaaagtgttggtggtgctgattcatccacttct
gatggtggtggttctgatgctattgaagcagaagcaaacgtatacttccatcaaatgttc
tctggtcagctgagtaatgatgcaacagttcaaatgctttctcgtttcaaagaatcaact
gaaaagagggagcaagcaattttcgagtgcatgatcggtaatctgtttgaagaatacaaa
tttctctccaagtacccagacaggcagcttaaaattgcagctgttctatttgggtcactt
attaagaatcagctggtaactcatcttgcacttggtattgccttgcgagctgtcttggat
gcattgcgcaagcctgctgattcgaagatgtttgtttttgggattttggcacttgaacag
ttcgttgatcgtctgattgaatggccccaatactgcaaccatatcttgcaaatatctcat
ctccgagtagctaattcagagcttgttgcattcattgaacgggcacttgctaggatatca
ctgacacattctgagtcagaggtaggccacagtcctgctgttgatcaattccatggtcct
atctcatcttccccaatgaattccgagggtcaaacatttcaagtggttggacagagtggt
ttgcagcaaagtatgcaaggaccctcttcaagccagcttcctctgaggcaacaaagctcc
atagaggagaggaaaccctctgctgctctctctggctacttgaagccagctttatcacct
gcagtgcaacctgccacagttccttcaagtgataatgctggcattcataagccacaaggt
ccaagcagtacttcagcagtactgacatcttctcctggttttcttcgcccatctagagcc
attacctcaggaaggtttggttctgcactgaatattgaaacacttgttgcagctgcagag
agaagagaaacacccatagaggctcctgcatcagaaatacaggataagatttcatttatt
atcaataacttatctgcggcaaatattgaggctaaagcaaaagagttcactgaaattttg
aaagagcagtactacccatggtttgctcagtatatggtgatgaaaagagcaagcattgag
ccaaattttcatgacttgtacctgaagttcttagataaagccaattcaaaatctctgttc
aaggagattgtccaagcaacctacgagaactgcaaggttcttttagggtcagagttgata
aagtcaagttcagaagagcgttctttgctgaaaaaccttggaagctggctaggcaaaatc
acaattggaaagaatcatgtcttgagggcgcgggagattgatccgaagtctttgattatt
gaggcatatgaaaaaggtttgatgattgcagttattcctttcacatcgaagattctggaa
ccatgccaaagcagtctagcataccaaccacctaacccatggaccatgggcattcttgaa
ttacttgctgagatttatgcaatgccaaatcttaaaatgaacctcaagtttgacattgag
gtcctgttcaaaaatcttggtgtggatctaaaagaggtagttccaagttctcttcttaaa
gaccgagtgagagaagtggaaggaaatcccgacttctcaaacaaggatgctggtggatct
tcccaaccacagatggtggctgatgccaaatctggcattatatcttcactaaaccaggtt
gaactaccacttgaggttgccagttctcatcctagcggcccttcacgaattttaactcag
tatgctgctccgcttcatcttccatctgctccaatgacggaggatgagaagcttgcagcg
cttggcctgtctgatcagcttccttctgctcaaggtcttttacaagggcaatcaccattc
tctgttagtcagcttcctgcaactgcatccaatatagagcagcaagttgttgtcaatcct
aagcttcatgctctgggcctgcagttgcattttcagagtgtacttcctattgctatggat
agagctatcaaagagatagtgtccagcattgtgcagcgcagtgtttctatagcaactcag
actacaaaggaacttgttttgaaggactatgccatggaatcggatgagacccggatacgt
aatgctgcacatttgatggtcgccagcctgtctggaagccttgctcatgtgacatgcaag
gaacctttacgtggttcgatatcaggccagcttcgtaatttacttcagggattgaccatt
gcaagtgacctccttgaacaagctcttcagcttgttactaatgacaatctcgatcttggc
tgtgccatgattgaacaagcagctacagagaaggctatacagactattgatggagaaata
gctcaacagctggccataaggaggaaacagagagagggccccggtgcctcattctttgat
gcaagcccttatacacaaggtcatatgggtgggttaccagaagctcttcgccctaaacct
ggccgcttatcccattctcagcaacgcgtttatgaggatttcgtccgcttaccttggcaa
aatcaatcaagccaaagctcaaatgctgtgactgctgttccttcaacttcttccagcagt
gttggtgtctccagggcgtatatgtcaggaactggacaaatgaactccaacctttactcg
tctggccttatgaatgcagtaataactgctgttccgcagccattggaaatatcagaagag
atagatacttcatctcaacttaatagtgcttcctctccccatcttgggatgggtgatagt
gtcacttctagcagttttgaaacggaggctactgttgaaccattcacatcggtctcagct
cctgaatcgcatccagtggaaccatccagtcttgcaaaggaatcgggagcttccttacag
ccatcaaatgcaacagctacctctgaacgtgttggaaatagtatctccgagccgttgctg
actactggtgatgcgttggataagtaccagattatctctgaaaagcttgaaaacctggtg
agtgaagaagctgaagaggcagaaattcaggcacttattgctgaagttccggtaatcatc
ctcaaatgtattagtagagatgaggccgccttggcagttgcccagaaggctttcaaggga
ttgtatgagaatgctacaaatagtgcacatgttggtgcccatcttgctattctgtcttca
atccgtgatgttagcaagctttttgttaaggagctaactagttgggttatttactctgat
gaggagaggaagttcaacaaagacattacagttggcttgattcgtagtgaactgctaaac
cttgccgagtataatgtgcacatggctaaattacttgatgctggcagaaacaagtctgct
actgaatttgctgtatctctaattcaaacactggtgataagtgattctagagtcatatcc
gagctacagaaccttgtagatgcacttgctaagattgcagccagaccaggttctcccgag
tctttacaacaacttgttgagattgctaagaaccctggtgctaatgctgctgcgctgtct
agtgtatcttttgggaaggaggatagcaacaagcaatctagagacaaaaagattgccgtg
actgctactggtaccagagaagattatggagtttctgaatgtattgaaccagattctgca
agtttccgcgagcaggtctctatgttgtttgctgagtggtaccgtatttgtgaaattcct
ggggcgaatgatgcaactcatgctcattatatcttgcaattaaaccagagtggcctatta
aaaggcgatgaaacttcagagcgttttttccgcagactcacggaactttctgtttcacat
tgtctttcgtctgaggtcatgagttccacaactcagtctcaccaagcacaaccactatca
ttccttgcaatcgatatctatgccaaattagtgttctcaattttgaagttttatcctgtg
gatcaaggatctagtaaattattgctgctgccaaaggttctcgctgtcactgtaagattc
atccagagggacgctgatgaaaagaagatgatctttaatcctagaccatattttaggctt
ttcattaattggttagtggatctcagttccctggaccctgtttttgatggtgcaaatttt
caggttttaacagctttagccaatgctttccatgctcttcagcccctcaaagttccagga
ttcagctttgcatggcttgaacttgtaagtcaccgaagttttatgcctaaactacttgct
ggaaatgctcagaaggggtggccttactttcaacgactattggtggatctcttccagttt
atggagccctttctgaggaatgctgagctaggagaaccggttcagtttctgtataaaggg
actctcagggttttgttggttctcctccatgattttccggagttcctctgtgactaccat
ttcagcttctgtgatgttatccctccaagctgcatacagatgcgaaatataattttaagt
gcatttcctcgcaacatgaggcttcctgatccatcaactcccaacttaaagattgatcta
ctcgcagagattagtcaatcccctcgcattctttctgaagttgatgcagctcttaaatca
aagcagatgaagggtgatgtagatgaatacctgaagacaaggcaacagggatctccattt
ttgagtgaattgaagcagaagttactgctctctccaagtgaagccgccaaggctgggacg
cgctacaatgtacccctgatcaactcccttgtactctatgttggaatgcaggctatccag
cagctgcagtcaaaaactcctcatgctcagtcgatgcccagtagtgttccatttgcagta
ttcttggttggtgctgctctagatgtattccagactttgataatggacttggacaccgag
gggcgttacttgtttttaaacgcagtcgctaaccaattgcgatacccaaataatcacaca
cattacttctcctttattctgctctacctatttgcggaatcaaaccaggagatgatccaa
gaacagataaccagggtcctattagaacgcctgattgtaaatcgacctcatccatggggt
cttctgatcacattcattgagctgataaagaatccaaggtacaatttttggagtcgacca
tttacaagatgtgccccagagatcgagaagctgtttgaatccgtctcaagatcatgtggt
ggccctaaacctgtggatgagaacgtggtgtcaggtggaatatctgatatccattag
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integrated database retrieval system
