KEGG   Solanum verrucosum: 125824982
Entry
125824982         CDS       T11474                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sver  Solanum verrucosum
Pathway
sver03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sver00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125824982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sver03021]
    125824982
   03036 Chromosome and associated proteins [BR:sver03036]
    125824982
Transcription machinery [BR:sver03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     125824982
   Coactivators
    SAGA/TFTC/STAGA complex
     125824982
Chromosome and associated proteins [BR:sver03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     125824982
    STAGA complex
     125824982
    TFTC complex
     125824982
    SAGA complex
     125824982
    SLIK complex
     125824982
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_EML_2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd NBCH_WD40 ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_Vps41 WD40_RFWD3 Tricorn_2nd Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N LisH_PAC1 PALB2_WD40 LisH RAB3GAP2_N Beta-prop_ACSF4 Cytochrom_D1
Other DBs
NCBI-GeneID: 125824982
NCBI-ProteinID: XP_049360282
LinkDB
Position
Unknown
AA seq 676 aa
MDEEEIEKAVVAYLKKKGFKQTEIAFQEEQQLNKNSSSSIHNNNSANSQIDPDLTKKILS
FSEFETGPQRYQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGHIQEARAF
FNSYREDHEMTHLRDLQKLEGVLSPSHLEEMEFAHSIRLSKVNIKMCQYSYDLLLQYLHK
TESITMLGIINERINFQVSPGQPGSISDDAEVVTLVASGHDASLINQKEVHWGLLEDSLE
ERLEKTGGSVPDSEKFDGDPKEGEVEENKKKSVEGGKQGAPLKKLKKDKVGVATGKSSRT
ESSTVTTAPRVKPELALPAIPVEVELSILEDLRNRVQLSNASLPSVSFYTFVNTHNGLNC
ASISHDGSLVAGGFSDSSLKVWDMAKLGQQTGPSFLQGETDSPSSEHVLGSSGGRRCYTL
LQGHSGPVYSASFSPDGDFLLSSSSDSTIRLWSTKLNANVVCYKGHNYPVWDVQFSPAGH
YFASSSHDRTAKIWSVDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQS
GDCVRIFIGHRSMILSLAMSPDGRYMASGDEDGTVMMWDLSSGRCITPLVGHSSCVWSLA
FSGEGSLLASGSADCTVKLWDVTTSTKAPLKEENKSGSNNRLRLLKTLPTKATPVYALHF
SRRNLLFAAGAFSKSA
NT seq 2031 nt   +upstreamnt  +downstreamnt
atggatgaagaagagattgagaaagcagtcgtagcgtatttgaagaagaagggtttcaag
caaacggagattgcttttcaagaagaacagcaactgaataaaaacagctcttcttcaatc
cacaacaacaactccgcaaattctcagattgaccccgacttaaccaaaaaaatcctttct
ttctctgaatttgaaaccggtccccaacgataccaagaagaatatagcaagcttcggtca
tgggcctatagttcactggacttgtataagcacgagttgcttcgtgttttgtatcctgta
tttattcattgtttcatggaacttgtcgctagaggtcatattcaagaagcacgagccttt
ttcaatagttaccgtgaagaccatgagatgacgcatttgcgtgatcttcagaagttagaa
ggcgttctctcaccatcccatctagaggaaatggaatttgctcattctatacggctgagc
aaagtgaacattaagatgtgtcagtactcctatgatcttttgctgcaatacttgcacaag
acagaatctattacaatgcttgggatcatcaatgagcgcattaattttcaagtttctcct
ggacagcctggctctatatctgatgatgcggaagttgtaactcttgttgcaagtggccat
gatgctagtctcataaatcagaaagaagttcattgggggctgcttgaagattctttagaa
gaacggttagaaaagacaggaggttcggttccagactcagaaaagtttgacggagatcct
aaggaaggagaagtggaagaaaacaagaagaagtcagttgaaggtggtaaacaaggtgca
cctcttaaaaaactaaagaaggacaaagttggggttgcaacagggaaatcttctcgtaca
gagagtagcacggtgacaactgcaccacgtgtcaaaccggaacttgctttacctgctata
cctgtagaggtagaactttctattctggaggacttgaggaaccgtgtacagttgagtaat
gcatcattgccctcagttagcttctatacatttgttaatacacataatggactaaactgt
gcatcaatatctcatgatggatcactagtggctggtggattctcagactcatctctgaag
gtctgggacatggcaaagcttgggcaacaaactggtccatcttttttgcagggggagact
gattcaccttcaagtgagcatgtgcttggctcaagtggtggaagaagatgttatacatta
cttcagggccattcagggcctgtttattctgcatccttcagtccggacggggattttctt
ctttcttcatcatcagattcaacaattcgcttatggagcacaaagttaaatgctaatgtt
gtttgctacaaaggccacaattacccagtatgggatgtccagtttagcccagctggacat
tatttcgccagttcttcacatgaccgcactgcaaagatctggtctgtggacaggatacag
cctctgagaataatggccggacacttgtcagatgtagattgtgtgcaatggcatgcaaat
tgcaattacattgcaaccggatcaagcgacaaaactgtacgcttgtgggacgtacagagc
ggcgactgtgtcagaattttcattggtcataggagtatgatcctatcattggcaatgtct
cctgatggtcgatatatggcatccggtgatgaagatggaacagtcatgatgtgggatctc
tcaagtggacgttgtattactcctttggtcggtcattcctcctgtgtgtggtcacttgct
tttagtggtgaaggctcacttcttgcatctggctctgctgattgcactgtaaaattatgg
gatgtaaccacaagcaccaaagcgccactaaaagaagagaacaaatctggaagtaacaac
agacttcgtttattgaagaccctgcctaccaaagctactccagtctatgctttgcacttt
tcacgaagaaatcttctatttgccgctggagctttctcgaaaagtgcatga

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