Solanum verrucosum: 125824996
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Entry
125824996 CDS
T11474
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sver Solanum verrucosum
Pathway
sver03013
Nucleocytoplasmic transport
sver03015
mRNA surveillance pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125824996
09122 Translation
03013 Nucleocytoplasmic transport
125824996
03015 mRNA surveillance pathway
125824996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125824996
03041 Spliceosome [BR:
sver03041
]
125824996
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125824996
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125824996
Spliceosome [BR:
sver03041
]
Complex C
Other components
EJC/TREX
125824996
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125824996
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
125824996
NCBI-ProteinID:
XP_049360302
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGDTKENEAYEEELLDYEEDDEKAPDSVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVPGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHVVVGTPGRVLA
LAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQAIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLAECNFPSICIHSGMTQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagatacaaaggaaaacgaagcttacgaggaagaacttctcgactacgaagaagat
gatgagaaggccccagattccgttaatggaaaagtaaacggcgagtctgccaagaagggt
tatgttggaattcacagttctggattcagagactttcttttaaagccagagctactgcgg
gctattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgtattccacaa
gctattctgggtatggatgttatttgtcaagccaaatctggaatgggcaaaactgctgtt
tttgttctttcgactctgcagcagattgaacctgttcctggtcaggttgctgctttggtc
ttatgtcatacaagggaattagcttatcagatctgtcatgaatttgagaggttcagcaca
tatttgcctgatatcaaggttgctgtcttctatggtggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgtcctcatgttgttgttggaactcctggaagagtacttgca
ttggctagagagaaagacctatctctgaagaatgtgaggcattttattctggatgaatgt
gacaagatgcttgattcacttgacatgaggagagatgtgcaggcaatcttcaagatgact
ccccatgacaagcaagtaatgatgttttcagcaacactcagcaaggagatccgtccagtc
tgcaaaaaatttatgcaagatccaatggagatttatgttgacgatgaggcaaagttgacc
cttcatggacttgtacagcattacatcaaattgagtgaaacggagaaaaaccggaagcta
aatgatctgctggatgccttggacttcaatcaagtagttatatttgtcaagagtgtgaac
agagcagcagagctgaataaattactagcggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaagaaagattgactcgctacaaatctttcaaggagggtcataag
agaattcttgtggcaaccgatttggttggtaggggcattgacattgaaagggtcaacatt
gttattaactatgacatgccagattctgcagacacttaccttcacagagtgggtagagct
ggtaggtttggaacgaaaggccttgccattacatttgtgtcctctgcatcagattctgaa
gttcttaatcaggttcaggaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttctacatacatgccatcttag
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