Solanum verrucosum: 125825412
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Entry
125825412 CDS
T11474
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125825412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125825412
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125825412
Spliceosome [BR:
sver03041
]
Complex C
Other components
Step II factors
125825412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
GAP1-M
NACHT
T2SSE
PDE8A_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
125825412
NCBI-ProteinID:
XP_049360713
LinkDB
All DBs
Position
Unknown
AA seq
711 aa
AA seq
DB search
MPSMAANNFSRNTHQNQTKGDFVSRKQKIEQQRKNLPIAAVERRLVEEVRNNDTLIIVGE
TGSGKTTQLPQYLFKWGFCRDGGIIGITQPRRVAAITVAKRVAEECGIPLGQKVGYAIRF
EDVTSGQTKIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTIHTDVLLGLLKNVQKAR
SKSINGVVNTDHNNSNNGHALEERIDNQNDGILKSCQVKKYNPLKLIIMSASLDARVFSE
YFGGAKAVHVQGRQFPVDIFYTHKPETDCIDAALITIFQIHLEEGPGDVLVFLTGQEEIE
SVERLIHERLRQLPECSRKLLTFPIFSSLPSEKQMRVFMPSPAGHRKVILATNIAETSVT
IPGIRYVVDPGLVKARTYDPKMGVDSLIIVTTSKAQALQRSGRAGRDGPGKCYRLYQESF
FEKLTDSTLPEIKRCDLSNVVLQLKALGIDDVINFDFIEKPDRTAVVNSLWSLYLLGAVT
EDNKLSDVGRQMARLPLDPVYSKALIVASQFGCLKEMLICVAMLSVESIFYAPREKLEES
RNSLKSFASPEGDHLTLLNVYRAADEFFQKNKMVHSEEKAEKNLRKWCKDNYINSRSLKH
ARDIHSQIVRNVEQMGLCVTSCEDDTLLLRRCLAASFFLKAAMKQPDGAYRVTLSGLIVQ
IHPSSVLFRAKPECIVFNELVHTNHSYVRNVSRIDYLWLIELAPHLYAVQD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggctgctaacaatttttcaagaaacactcatcaaaatcaaacaaaaggg
gactttgtttccaggaagcaaaagattgagcagcagagaaaaaatttaccaattgctgca
gttgaaaggagactagtggaggaggtgcgaaacaatgacacactgataattgttggagaa
actggaagtggaaagacaactcaactacctcagtatctttttaaatggggattttgccgt
gatggtggtatcattgggataactcaacctagacgtgtggctgctatcactgttgctaaa
cgtgttgctgaggagtgtggcattccattgggtcaaaaggttggatacgctattaggttt
gaagatgtaacttctggccaaacaaagatcaaatatatgacagatggtttgcttctgagg
gaagcattattggatccatacctctccaagtattctgttattattgttgatgaggcgcac
gagcggactatccacactgatgtattgcttggattgttaaagaatgtacagaaagcaagg
tcaaaatctatcaacggcgtggtaaatactgatcataataattctaataatgggcatgcc
ctggaggaaaggattgacaatcagaatgacggtattttgaagtcatgtcaagtgaaaaag
tacaacccattgaaattgatcatcatgtcagccagtctggatgcacgagttttctcagag
tactttggtggtgcaaaggctgttcatgttcagggacggcagtttcctgtcgatatattc
tacacccataagcctgagacagattgcatagatgctgctttgattactatatttcagata
catctagaggagggacctggtgatgtgcttgtattccttactggtcaagaggagattgaa
tccgttgaaaggcttatccatgaacgtctccgacaattacccgaatgcagtagaaagctc
ttaacttttcccatattctcatcacttccctctgagaagcaaatgagggttttcatgcct
tcaccagctggacatcgtaaggtgatactagcaacaaatattgctgagacatcggtgaca
atacctggaatcaggtacgttgtggatcctggactggtgaaagcccgaacatatgatcct
aagatgggagttgattcattgatcattgtcacaacatctaaagctcaagctctgcagagg
agtggacgtgcaggacgtgatggacctgggaaatgctatcgtttgtatcaagaaagtttc
tttgagaaacttacagattctacattacccgagattaagagatgtgacctctcgaatgtt
gtattgcagctcaaggctctaggcattgatgatgtcatcaactttgacttcattgaaaaa
ccagacaggactgctgtagtcaactcattgtggtctctttacttgttgggtgctgtaaca
gaagataataaactttcggatgttggacgtcaaatggccaggctaccccttgatccagtc
tattctaaggctctcattgttgctagccaatttggctgcttgaaagaaatgttgatctgt
gttgcaatgctttcagtggaatctattttctatgcaccacgtgaaaagttggaagagtca
cgaaactcattgaaaagctttgcaagtccagagggggatcatctgacattgcttaatgta
taccgcgctgctgatgagttctttcaaaagaacaagatggtacacagtgaagaaaaagct
gaaaagaatcttagaaaatggtgcaaggataattatattaacagtcgctctctaaaacat
gctcgtgatatccacagtcaaattgtgaggaatgttgaacaaatgggtctttgcgtcact
tcttgtgaagatgatacgcttctcctccgcagatgccttgctgcctcgttttttcttaaa
gcagctatgaagcagcctgatggtgcatacagggtgacgttaagtggtttgattgtgcaa
atacacccgtcttctgtcctgttccgagccaagccagagtgtatagttttcaatgaactg
gttcatactaaccatagttatgtccgtaatgtctctagaatcgattacttgtggctcatt
gagctggcacctcacttgtatgccgtgcaagactaa
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