Solanum verrucosum: 125827561
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Entry
125827561 CDS
T11474
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125827561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125827561
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
125827561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_14
TPR_17
TPR_8
TPR_12
TPR_7
TPR_19
TPR_CcmH_CycH
TPR_9
TPR_15
ARM_TT21_C
TPR_6
BTAD
TPR_10
UNC80_C
TPR_NPHP3
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
125827561
NCBI-ProteinID:
XP_049362815
LinkDB
All DBs
Position
Unknown
AA seq
1179 aa
AA seq
DB search
MSVEDDAAIRRLEEAIVSQPGDPSLHFDLGVLLWDKGGELPDIQEKAAQHFLIAAKLNPQ
NAAAFTYLGHYYARVAVDSQRAIKCYQRALGLNPDDSIAGEAICDILDATGKETLEIAVC
REASHKSPRAFWALCRLGYLLVNQNKWSEAVQSLQQAIRGYPTCADLWEALGLSYQQMGM
FTAAVKSYGRAIELEESRVFALVESGNVYLMLGSFRKGIEQFRQALQISPLNLSAHHGLA
SALLSLAKESIDSGAFKWGASLLEEASKVALASTSIVGNISCAWKLLGDIQLTYAKCFPW
MDEGLGSGADENSFSSSILSWKRICCLAVRSACRSYQRALHLSPWQANVYTDVAIASELL
FSLKENCKDDMNPWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFIRALQLDV
SLAVAWAYLGKLYRQEGESQLAQLAFDRARSIDPSFSLPWSGMSADAAARNLKPDEAYEC
CLRAVQIFPLAEFQTGLVKLALQSGYLRSPEAFGAIQQALQRAPQYPESHNLKGLVCEAR
SDYESAVASYRLARLAARVFAGKLSKSSLADISINLTRSLCMAGNADDAIEECKYLESKG
LLDVEGLQLYALSYWKLGKYDLALSMAKRLASFALPTEHPLAAASVSFICRLVYHISGKE
LAMRYILQLPKRAFQSSRVRLVVSAIHALDESHQLDSVVSSVREYLSSSKEIAALDFMAT
LGLLVKHGSKDCLEVQQGVNYLRRALHISPNSHLIRTLLGYLLVASKEWKDVHISARCFR
VDPSEHQKKEGVKSSVEIFGAGAVACCNVGSGKKTLAMSICRENSTLECKTIKMLQKCVH
QEPWDHHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDEISSQYQKFQL
LLCAAEVSLHCGNNFKCIMHAKSALEMQLPDNYLFFAHLLLCRAYAVEDNYSGLHEEYIR
CLELKTDNHIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAMYNLVQGLT
AVWNGEFIDAEESLAQACLLAGGESCLFLSHGVICMEIARQQSDSDFLSLAIRSLKKAKD
SSSTPLPFVSLLLAQAEASLGSESKWEKNLIEEWSSWPPEIRPAELFFQMHLLARRLTEG
SGAISNLEPSTSPLRWILQAIHINPSCLRYWRALLKFME
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaagacgatgctgctataagacggttagaagaagcgattgtctcccagccc
ggcgacccttctctccactttgatctcggagtcttattatgggacaagggaggagaattg
ccagatattcaggagaaagccgcacaacattttctcatagcagccaagctcaacccacaa
aacgctgctgctttcacatatttgggacattactatgctcgagtagctgtcgactctcag
agggctatcaagtgttatcagagagcccttggccttaatccagatgattcaattgctggg
gaagcaatttgtgatatactggacgcaactggaaaagagaccttggagatagctgtatgc
cgtgaagcttcacacaagtcgcccagggccttttgggctttatgcagattgggttacctt
ctggtcaaccaaaacaagtggtccgaagcagtgcagagtcttcagcaggccatcagaggc
tatcccacatgtgctgatttgtgggaggccctgggtctatcctaccagcaaatgggcatg
tttacagccgctgttaagtcctatggaagagctattgaattggaggaatcacgagtattt
gcactggtagaaagtggaaatgtctatttgatgcttggttcgtttcgaaagggaatagag
cagtttcgacaagctttacaaatctcacctctgaatttgtccgcacatcatgggcttgcc
tccgcactccttagtttggcaaaggaatctattgattctggtgcctttaaatggggagct
tcactcttagaggaagcttcaaaggtggctctagcaagtacttccattgttggcaatata
tcttgtgcttggaagcttcttggagatattcagctcacatacgcaaaatgttttccatgg
atggatgaaggattgggctcaggagctgatgaaaattcattcagtagttcgatcctgtca
tggaagagaatctgctgtttagcagtcagatctgcttgtcgctcctaccagcgggcattg
catttgtccccttggcaagctaatgtgtatactgatgttgccattgcatctgagcttctt
ttctcgttaaaggagaactgtaaagatgacatgaacccttggtttgtgtctgaaaagatg
tgccttggaggcttattgcttgaaggttgcaatagcgagttttgggtagccttagggtgt
ttatctgatcattctgcattaaagcaacatgctttcatacgagcactgcagttggatgtt
tctcttgctgttgcgtgggcatatcttggaaagctttataggcaggagggggaaagtcaa
ttggctcagctagcatttgatcgtgcaagaagtattgatccttcattttcattgccatgg
tcaggcatgtcggctgatgctgctgcaaggaatctgaaaccagacgaggcgtatgagtgc
tgtctgcgggcggttcagatctttccacttgcagaattccaaacaggtctagttaagctt
gctctgcagtctggttatctgcgatctccagaggcatttggagccatccagcaggctttg
cagcgcgcacctcagtatcctgaatctcacaatctgaaagggctagtttgtgaggcacgg
agtgattatgaaagtgctgttgcttcatatagactggcacgccttgctgccagagttttt
gcaggaaagctttcaaaatcatctcttgcagatatatcaattaatttgaccaggtcactt
tgtatggcaggaaatgctgatgatgctattgaagaatgtaaatatttggaaagcaaaggt
cttctggatgtagaaggtttgcagctttatgcgctttcttattggaaacttggaaaatat
gaccttgctctttcgatggcaaagagactggcctcatttgctttaccaacagagcaccca
ttggctgctgcctccgtcagtttcatctgtagattagtatatcatatttcagggaaggaa
ttagctatgagatacatattacaactgccaaaaagagccttccagagttcaagagttagg
cttgtagtatctgctattcatgcattagatgaaagtcatcagcttgactcagttgtttca
agtgttcgtgagtatctttcatctagcaaagagattgctgcactggatttcatggccaca
ctgggcttactagtcaaacatggatctaaggactgcctagaagttcagcagggggtcaat
tatctaagaagagctcttcatatttctccaaacagtcatttgataaggacccttcttggc
tatctgttagtagccagcaaagaatggaaagatgttcacatttcagctcgatgcttcaga
gtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttgagatttttggt
gctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatc
tgtagagaaaattcaacactggagtgcaaaacaatcaagatgctgcagaagtgtgtccat
caggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcg
cgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggct
cttcgaagtgagctttatgcaaaagatgagatttcttcccagtaccaaaagttccagctt
ctgctttgtgccgcagaggttagtttgcattgtgggaataatttcaagtgcattatgcat
gcaaaaagtgctctagagatgcagcttccagataactacctcttctttgcacacttgcta
ctgtgtcgtgcctatgctgtcgaagataattattcagggcttcatgaagagtacataagg
tgcttggagctcaaaactgataatcatattggttggatttgtcttaagtttcttgaaagt
cgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtgtggcaaa
gaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaact
gcagtttggaatggggaatttattgatgcagaagagtcccttgcgcaagcttgcttgttg
gctggtggcgagagttgcctttttcttagccatggtgttatttgcatggagattgccagg
cagcagtccgattcagattttttatcacttgctattagaagtctgaagaaagcaaaagac
agttcttcaacgccgctaccctttgtctcactgctattggcacaagcagaagctagcctc
ggctctgaatcaaagtgggaaaagaacctcattgaggaatggtcatcttggccgccagag
attaggcctgctgaactgtttttccagatgcatttgcttgctagacggctgacagaaggt
tccggagctatatccaatctagagccatctacaagtcctctaagatggatacttcaagct
atccatatcaatccatcttgtttgagatattggagagctttgctgaaatttatggagtaa
DBGET
integrated database retrieval system
