Solanum verrucosum: 125828802
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Entry
125828802 CDS
T11474
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sver Solanum verrucosum
Pathway
sver03013
Nucleocytoplasmic transport
sver03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125828802
03015 mRNA surveillance pathway
125828802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125828802
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125828802
mRNA cycle factors
P-body specific factors
125828802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
125828802
NCBI-ProteinID:
XP_049364081
LinkDB
All DBs
Position
Unknown
AA seq
508 aa
AA seq
DB search
MKNRRTKVVLRHLPPTLSQSMLLEHVDSRFAGRYNWFTFRPAKTSLKHQSYSKAYIDFRN
MEDVTEFAEFFDGHMFVNEKGTQFKTIVEYAPSQRVPKHWLKKDAREGTILKDPAYMEFL
EFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYVRQKRAVKSGARRSISNGKS
SKSVGGTSSRSPSSTASRRGSEKRTSTTMYVQRDSSKAGNSKDKSYILVPKRGDQQLSVK
SGTSAPGSGIDVVEGEIGRSVTADSGKKKILLLKGKEKEGPNVSGGSLAQQNVSSALKNS
PSLSALKQNQRQETSGRIIRSILLKDARQNQSAFQSDQIQDKDMRPPLPPSMQLFQKDTS
GANEDKVVGNEKHVVHIEKQERRSRNRDRPDRGVWAPLRRADSSQASNGSLSSGIPQSSQ
VREFVEGGQGELKNDLPIARGSEFRPIGSGRNSHSSADNGNSKHGGRRGLRDVAGTSIGE
GKPVKRGGTSAYSSLEKQVWVQKSSSGS
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatcggcgaaccaaagtcgttctacgacacttgccgccgacactttctcagtct
atgcttctggagcatgttgattctcgctttgctggtcgatacaattggttcacttttcgc
ccagccaagaccagcctgaagcatcaaagctattcaaaagcctatattgactttcggaat
atggaagatgttactgagtttgctgagttctttgatgggcacatgtttgtgaatgagaaa
ggcactcagttcaaaaccattgtcgagtatgctccttcccagcgtgtcccaaagcactgg
ctcaagaaggatgcccgtgaagggaccatattgaaagatcctgcatatatggagttcctt
gaatttcttgcaaagcctgttgagaatcttccgagtgctgagatacaattggagagaaag
gaagctgaacgagctggctcagcaaaggatgctcctatagttactccattaatggattat
gtacgtcagaaaagagctgtgaagagtggagctcggaggtctatctctaatggaaaatca
agtaaaagtgttggtggcacaagctcaagaagtcctagctcaactgcatctagacgaggc
tctgaaaagagaacttctacaaccatgtatgttcaacgggacagttctaaggctggcaac
agtaaggacaaatcctatattctagtgccaaaacgtggtgatcagcagctctctgtcaag
tctggtacttctgctcctggatctgggattgatgtagtggaaggggaaattggtcgttca
gtaactgctgatagtgggaagaagaaaatcctgctcttgaaggggaaggaaaaagaaggt
cctaatgtttctggtggttcactagctcaacagaatgtgtcatctgctctcaagaattca
cctagtttatctgctctgaaacagaaccagcgccaagagacaagtggcagaatcatcaga
agtattcttctaaaggatgctcgacagaatcagtcagcatttcaatcagatcaaatacag
gataaggacatgagacctcctctgccaccaagtatgcagttgtttcagaaggatacaagt
ggagctaatgaggataaggttgttggaaatgaaaagcatgttgtccacattgagaaacaa
gaaagacgttctaggaatagagatcggcctgatcgtggtgtttgggctcctcttcgtcgt
gctgatagttcacaagccagtaatggatctttatcatctggtattcctcaatcttcccaa
gtgcgggagtttgttgaagggggtcaaggagaattgaaaaatgatctaccaattgcacgc
ggtagtgagttcagaccaattggaagtgggcgtaattctcactcttctgcggataatggt
aactctaaacatggtggtcgtcgtggtttgagggatgtggctggcacttctattggggaa
ggaaaacccgtgaaaaggggaggcacttctgcttacagttctcttgagaaacaagtgtgg
gttcaaaagtcaagttctggttcttag
DBGET
integrated database retrieval system
