Solanum verrucosum: 125830961
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Entry
125830961 CDS
T11474
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125830961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125830961
03041 Spliceosome [BR:
sver03041
]
125830961
03009 Ribosome biogenesis [BR:
sver03009
]
125830961
03016 Transfer RNA biogenesis [BR:
sver03016
]
125830961
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125830961
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125830961
Spliceosome [BR:
sver03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125830961
Complex C
U4/U6.U5 tri-SnRNP related factors
125830961
Ribosome biogenesis [BR:
sver03009
]
Eukaryotic type
Pre-60S particles
Helicases
125830961
Transfer RNA biogenesis [BR:
sver03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125830961
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
125830961
NCBI-ProteinID:
XP_049366107
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MESSPAAVKRKEPEANPGEKEVPELNSSSKRANLTRTCVHEVAVPSSYTSTNDESIHGTL
SNPCYNGEMAKIYPFKLDPFQEVSVACLERNESILVSAHTSAGKTAVAEYAIAMSFRDKQ
RVIYTSPLKALSNQKYRELSHEFSDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICNIHKQP
CHVVYTDFRPTPLQHYMFPMGGSGLYLVIDENEQFREDNFLKMQDSFAKKKVGDGSNSAN
ARVRGRIAKGGSTSGGVSDICKIVKMIMERKFQPVIVFSFSRRECEQHAMSMPKLDFNTE
EEKEIVKEVFHNAVDCLSEEDRNLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEG
LIKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGI
CIIMIDEKMEMDSIKDMVLGKPAPLVSTFRLSYYTILNLLSHAQGQFTAEHVIKHSFHQF
QHEKALPDIGKKVSKLEEEAAKLDASGEGEVAEYHKLKLEIAQREKKLMAEITRPERVLH
FLLPGRLVKVWEGGKDWGWGVVVNVVKKPPAASGSMPAALSASRSTGYIVDTLLHCSLGS
GENGSQPKPCPPRPGEKGEMHVVPVQLPLISSLSKLRISVPADLRPLEARQSILLAVQEL
QKRFPQGLPKLNPVKDMGFEDPEFVDIVNQIEELEKKLFAHPLHKSQDEHQLKSFQKKAE
VNHEIQQLKSKMRDSQLQKFRDELKNRSQVLKKLGHIDADGVVLLKGRAACLIDTGDELL
VTELMLNGTFNDLDHHQTAALASCFIPGDKTNEQIHLRAELTKPLQQLQDTARRIAEIQR
ECKLEINIEEYVEASVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSIIRLVRRLDEFLNQ
LKGAAHAAGEVDLENKFAAASESLRRGIMFANSLYL
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttctccggctgccgtgaaacggaaggaaccggaggcgaaccccggcgagaag
gaagtcccggagctaaattcatcttccaagagagcaaatttaactagaacctgcgtgcac
gaggtagcagttccatctagttacacttctacaaatgacgaatcaattcacggaaccctt
tcaaatccttgttacaatggtgaaatggcgaaaatctacccattcaagctcgacccattt
caggaagtgtcagttgcatgcttggaacgaaatgaatcaatccttgtatcagcacatacc
tccgctgggaaaactgctgttgctgagtacgcaattgcaatgtcgtttagggataaacaa
agggttatttatacttcgcctttgaaagctttgagtaatcagaagtacagagagttaagt
catgagttttctgatgttggtttgatgactggtgatgtaacgctttcaccaaatgcgagt
tgtttggtgatgacgacggagatattaaggggtatgctttataggggttctgaggtgtta
aaggaagttgcctgggttatatttgatgagatacattacatgaaggatcgtgaaagaggg
gttgtttgggaagagagtattatattcttgccaccagctattaagatggtttttctttca
gcgactatgtcaaatgctactcagtttgctgaatggatatgcaatattcataaacagcca
tgtcatgtagtctacactgattttcggcctaccccgttgcagcattatatgtttccaatg
ggtggttctggattgtatcttgttattgatgaaaatgagcagtttagagaggacaatttt
ttgaagatgcaggatagttttgcaaagaagaaagtaggagatggtagcaacagcgcaaat
gctagggttagaggtagaattgctaaaggtggctctacctctggtggtgtctcagatatc
tgcaaaattgtcaagatgatcatggaacggaagtttcagccagtcattgtgttcagtttt
agtagaagagaatgcgaacaacatgcaatgtctatgcccaagcttgattttaatactgaa
gaggagaaggaaatagtgaaggaggttttccataatgcagtggattgcttgagcgaggaa
gatagaaacttaccagctattgaattaatgttgcccctacttcagcgtgggattgctgtt
caccactctggcctgcttcctgttataaaggaacttgtggaacttctcttccaagaagga
ctcatcaaggctctttttgcaacagagactttcgccatggggctaaacatgcctgcgaaa
actgttgtctttaccagtgtaaagaaatgggatggtgatagtcatcgttacattggatct
ggtgagtatatacagatgagtggaagagcaggacgtcgtggaaaagatgaccgtggtatt
tgtattatcatgattgatgagaagatggagatggatagcatcaaggacatggttttgggt
aaaccagctccattagtcagcacgtttaggctgagttactatacaattctgaatttattg
agtcatgctcaaggccaatttactgccgagcatgttatcaaacactcattccaccagttt
cagcatgagaaggcgttacctgacattggaaagaaggtctctaagctggaagaagaagct
gcaaagcttgatgcatcaggggagggtgaggtcgcagaatatcataaactaaagcttgag
atagcacaacgtgagaaaaaactgatggctgaaataacacggcctgaaagggttctccat
tttcttcttcccggcaggctggtcaaggtatgggaaggtggaaaagattggggttggggt
gttgtagtcaatgtggtaaaaaagcctccagctgcgtcgggttctatgcctgctgcactc
tctgcttcacgtagcacgggctatattgtggataccctacttcattgctctcttggttct
ggtgaaaatggttctcaacccaaaccatgtcctcctcgtccaggggagaagggagaaatg
catgtagttcctgttcaattgcccctgatttcttccctcagtaagcttagaatatctgtt
cctgcggatcttcggccattggaggcaaggcaaagcatccttcttgctgttcaggagctt
cagaaacgttttcctcaaggcctcccgaagcttaaccctgtaaaggacatgggatttgaa
gatcctgaatttgttgatatagtgaaccagattgaagaactggagaaaaaattgtttgct
catccactacacaagtcacaagatgaacatcaacttaagagtttccaaaagaaggcggaa
gtgaaccatgaaattcaacagctcaagtcaaaaatgcgggattcacagcttcaaaaattt
cgtgatgaacttaaaaaccgttcccaagtcttgaagaagctgggtcacatagatgctgat
ggtgttgtgctgttgaagggacgagcagcctgcttgatagacaccggggatgaactcctc
gtgactgaattgatgttgaatggtacattcaatgatcttgatcatcatcaaactgcggct
ctggcaagttgctttatcccaggagacaaaacaaatgaacaaatacatttaagagctgag
ctaactaaaccattacaacagctacaagatactgcaagaagaatagcagagattcaacgt
gaatgcaagttggagataaacattgaagagtatgtagaggcatcagtacggccattcttg
atggatgtcatttactgttggtcgaagggagcatctttcgcggaggttatacaaatgact
gatatctttgaaggtagcatcattcggctagtaagaaggcttgatgaatttttgaaccag
ttaaaaggtgctgcacatgctgcgggagaagtggatttggagaacaaatttgctgctgcc
agtgagagccttcgacgagggataatgtttgcaaattctctgtacctctag
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integrated database retrieval system
