KEGG   Solanum verrucosum: 125831403
Entry
125831403         CDS       T11474                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sver  Solanum verrucosum
Pathway
sver03082  ATP-dependent chromatin remodeling
sver03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sver00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125831403
   03083 Polycomb repressive complex
    125831403
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sver03036]
    125831403
Enzymes [BR:sver01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     125831403
Chromosome and associated proteins [BR:sver03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     125831403
   HDAC complexes
    Sin3A-HDAC complex
     125831403
    BRAF-HDAC complex
     125831403
    REST complex
     125831403
    SHIP complex
     125831403
    MiDAC complex
     125831403
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     125831403
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125831403
  Chromatin remodeling factors
   NuRD complex
    125831403
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 125831403
NCBI-ProteinID: XP_049366565
LinkDB
Position
Unknown
AA seq 456 aa
MSSSVVEGGASLRSPGTDATNRRVSYFFDSSIGEYYYGQGHLMKPHRIRVAHNLILNYNL
HRKMEIIQPFPATKEEIGWFHSSDYVEFLSSVSPEIVNDKYDSYQRRRFNVGPDSESFDC
PLFYGLFDFCQTSAGGSIGAAAKLNRNEADIAINWAGGLHHAKKSEASGFCYVNDIVLGI
LELLKVHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDIGASTGK
YYALNAPLNNGIDDESFRSLFRPVIQKVMEVYQPEAVVLQCGADSLAGDRLGVFNLSVKG
HADCIRFLRSFSVPLMMLGGGGYTVKNVARCWCYETAVAVGVEPDNDLPYNEFYENFAPD
YILYHESLPMKNENSPSELEMIRNTLLEQLSRLPHVPSAPFQVTPSVTVVPEKEDEYMDQ
RPKPGIQMSQDYDTDDEEKSNNGKFSNYYNYFNNEN
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgagttcttccgtcgtggagggcggcgcgtcgctccgttcgccgggtactgacgctaca
aaccgccgtgtttcttacttcttcgactcttccatcggcgaatattattacggccagggt
catctaatgaagcctcaccgtattcgtgttgcccacaatcttattttaaactataatctt
caccgtaagatggagataattcaaccgtttccggcgactaaggaggaaatcggatggttc
cactcgtcggactatgtggagtttctctcttcagtttctccggagattgttaatgataag
tacgattcctaccagcgtagacgcttcaatgtcggtccggattcggaaagctttgactgc
cctcttttttatggtctttttgatttttgtcaaacttcagctggtggctcaattggcgcc
gccgctaagcttaatcggaatgaagctgatatagctatcaattgggctggtgggttgcat
catgcaaagaaaagtgaagcttctggattttgctatgtcaatgatattgttcttggaatt
ctagaacttctcaaggtccacaagcgtgtattgtatgtagacattgatgttcatcatggg
gatggagttgaggaggctttttacaccactgatcgggttatgacagtgtcttttcataag
tttggagacttctttcctggtacagggcatgtcaaagacattggtgcaagtaccgggaag
tactatgccttaaatgcaccattgaataatggtattgatgatgaaagtttccgtagtcta
ttccgtcctgtaatccaaaaagtgatggaggtttatcaacctgaagctgttgttcttcaa
tgtggtgctgattcactagcaggagacaggctgggtgtctttaacttgtctgtcaaaggc
catgcagattgcattcgattcctcaggtctttcagtgtccctttaatgatgttgggtggt
ggaggttatactgttaaaaatgttgctcggtgctggtgctatgagacagcagttgcagtt
ggagtagagcctgataatgatttgccttacaatgagttttacgagaattttgcccctgat
tatattctttatcatgaatcattacccatgaagaatgagaattcgccctcggaactagag
atgatcaggaacactttgctggagcaactctcgcgtttaccccatgtacctagtgctcca
tttcaagtgacaccttctgtaacggtagttccagaaaaggaagacgaatatatggatcaa
aggcctaaaccagggatacagatgagccaggattacgatactgatgatgaggagaagtca
aataacggaaagttcagtaattactacaattacttcaacaacgagaactga

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