Solanum verrucosum: 125833349
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Entry
125833349 CDS
T11474
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125833349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125833349
Enzymes [BR:
sver01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125833349
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125833349
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125833349
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
125833349
NCBI-ProteinID:
XP_049368451
LinkDB
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Position
Unknown
AA seq
605 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELTPYVLLRRPNKDKSVISEDVSESAPIDGYFLRYKWYRIQS
DKKVAICSIHPSEQATLQCLGCVKAKLPVTKSYHCSPKCFSDAWQHHRVLHERAASAVNE
NGNEEEEIFGRFNSTGSGVTNASLASSQSSGSLANGTTPLYPAAITQRNGSETWFEVGRA
KTYTPSADDIGHALKFECVVVDAETKLPVGPSSTILTSRVIPAPCPTPRRMFSVSGVDIP
GHLDLDGRLSSSGTFTVLSYNILSDAYATNELYSYCPSWALSWTYRRQNLLREIVGYRAD
IVCLQEVQSNHFEEFFAPELDKHGYQALFKRKTAEVFSGSINNIDGCATFFRRDRFSHVK
KYEVEFNKAAQSLTDAVVPIAQKKTALNRLVKDNVALIVVLEAKFSNQGVDNPGKRQLVC
VANTHVNVQQELRDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSMPGSAPHTLLALGK
VDPMHQDLVVDPLGILRPASKLTHQLPLVSAYSSFARMGVGLGLEQQRRRMDPNTNEPLF
TNCTRDFIGTHDYIFYSADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK
PRTRR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtgtgttacgggtgcatctcccctccgatataccgatcgtagggtgtgaactc
acaccttatgtccttttacgacggccaaacaaggataagtctgttatttctgaggatgtt
tcagagtctgcaccgattgatggatatttcttgagatacaagtggtatcgtatacaaagt
gataaaaaagttgccatctgtagtatccatccatctgagcaagccacattgcagtgcctt
gggtgtgtgaaggccaaactcccagtcactaagagttaccattgctcacctaaatgcttc
tcagatgcatggcaacatcatcgtgttctgcatgaacgtgccgctagtgctgtaaatgaa
aatggaaacgaggaggaagaaatatttgggcgatttaatagtactgggtctggtgttact
aatgcaagtttggcttcttctcaatcaagtggcagcttggcgaatggaaccacaccttta
tatcctgcagcaataacccagagaaatggcagtgaaacctggtttgaagttggacgggct
aaaacatatacaccatctgcagatgatattggtcacgcgcttaaatttgaatgtgttgtt
gtagatgcagaaacaaaattacctgttggaccttctagtaccatattgacgtcccgagtg
attccagctccgtgtccaactccacgtcgcatgttttcagttagcggagttgatattcct
ggacatctggatttggatggtcgattatcatcctcaggaactttcactgtgctctcctac
aatattctgtctgatgcctatgcaacaaacgaattatacagttattgcccctcttgggct
ctttcttggacatatcgtagacagaatcttttgcgcgaaatagttggctaccgtgcagac
attgtttgtcttcaagaggttcaaagtaatcattttgaggagttctttgctcctgagctg
gataaacacggttaccaagctctgtttaaaagaaaaacagctgaggtgtttagtgggagt
attaacaatattgatggttgtgctacatttttccgccgagatagattctcacatgttaaa
aaatatgaggtcgagtttaataaagctgcacaatctttgactgatgctgtggttcccatt
gcccaaaagaagactgcattaaatcgtttggttaaggataatgttgcacttatagtggtt
ttggaagcgaagttcagcaaccagggggttgacaaccctgggaagcgtcaactagtttgt
gtggccaacacacatgtaaacgttcagcaagaattaagggatgtcaaactgtggcaggtt
cacacacttcttaaaggacttgaaaaaatcgctgccagtgctgacatcccaatgcttgtc
tgtggggattttaattcgatgcccggaagtgctcctcatacacttcttgctttggggaaa
gttgatccaatgcatcaagatctagtagtggatcctcttggtattttgcgtccagcttca
aagttaacacaccaactcccattggttagtgcttattcatcctttgccagaatgggggtg
ggacttggactagagcagcaaaggaggaggatggatcctaatacaaatgagcccttgttt
accaactgcaccagagattttattggcactcatgattatatattctactcagctgattca
ttaactgttgaatctttattggagctcttggatgaagaaagcttgagaaaagacacagca
cttccttctccagagtggtcctctgatcatatagcactcttagctgagttccggtgcaag
ccgagaactagacgctga
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