Solanum verrucosum: 125833629
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Entry
125833629 CDS
T11474
Name
(RefSeq) uncharacterized protein LOC125833629
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125833629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125833629
03041 Spliceosome [BR:
sver03041
]
125833629
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125833629
Spliceosome [BR:
sver03041
]
Complex B
Other components
Prp19-related factors
125833629
Complex C
125833629
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
ARM_TT21_C
TPR_19
Motif
Other DBs
NCBI-GeneID:
125833629
NCBI-ProteinID:
XP_049368749
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
MSIPRELYPTEDDLPYEEEILRNPFSLKQWWRYLVARADAPFTKRRVLYERALQALPGSY
KIWHAYLRERLELVRNLPINHSLYQALNNTFERALVTMHKMPRIWIMYLVSLTQQKLVTR
TRRTFDRALCALPVTQHDRIWEHYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDLLEFL
LNSELWQEAAERLAGVLNDDRFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSDSEVEDEGSNGEVGAEDNVDEEDDRLNVAKLEKKLKEFWLNDDKDIDLRLAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTFTEAVRTIDPMKAVGK
PHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGAL
ELMRRATAEPTVEVKRRVAADGNEPVQIKLHKSLRLWLLFVDLEESLGSLESTRVVYERI
LDLRIATPQIIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEQTPADAVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPANEKLS
MYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRARALYK
HSSQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKD
QMQTLEEAKDVLKKAGVADDEMAALERQLAPPENDTKSKEQSRVVGFVSAGVVESNGQKV
TANNEDIELPEESDSEEDDDKVEIALKEVPDAVFGGLIRKRDEGDEAEDDSTAKNKDSDG
PLGALERMKRRKQQAS
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcccgagggagctctaccccaccgaagatgacctcccgtacgaggaagagatc
ctcagaaatccgttcagcctgaagcagtggtggcgctatctagtggcacgagcagatgcg
ccattcacaaaacgaagagtgctttacgaacgagctctacaagctctccccggaagctac
aaaatatggcacgcgtatctccgcgaacgtctggagttagttcggaatcttccaatcaac
cactccctgtaccaagctctaaacaacactttcgagagagcactcgttacaatgcacaaa
atgccacgaatttggatcatgtacttggtgagtttaactcaacagaagctcgttactcga
actagacgcactttcgatagagcattgtgtgcattacctgttactcagcatgataggatt
tgggaacattatttagtgtttgttagtcaaaggggaattcctattgaaacatcacttagg
gtttataggaggtacttgaagtatgatccttcccatattgaggatttgcttgagtttttg
ttgaattctgagctgtggcaggaggcggcagagaggttagctggtgtattaaatgatgat
cggttttattctattaaagggaagactaaacataggctttggttggagctgtgtgacttg
ttaacacagcatgctactgaaatatcaggtttgaatgtggatgcgataattagaggaggg
attaagaagtttaccgatgaggttgggaggctttggacgtcgttggcggattattacatt
aggaggaagttggttgagaaggcgagagatattttcgaagaagggatgacaactgtggtg
actgttagggattttagtgttatctttgatgcgtactcccagtttgaggagagtatgctt
gccttgaaaatggaggagatgagtgatagtgaggtggaggatgaagggagtaacggtgag
gttggggcagaggataatgtggatgaggaggatgataggttgaatgtggcaaaattggag
aagaagcttaaagagttttggctaaatgatgataaggatattgacttgagattagcgagg
ctagaacatcttatggataggaggccagagcttgcgaatagtgtccttttgaggcaaaat
ccgcataatgtagaacagtggcatagaagggtaaaactattcgaagggaatccgacaaag
caaatattaacgttcactgaggcagttagaactattgacccaatgaaagctgtggggaag
ccacatactttgtgggttgcatttgcaaaactttatgaaaaccacaaggatattgcaaat
gcaagagtcatctttgataaggcagtgcaggtgaattataaaactgttgatcatctggct
agtgtttggtgtgaatgggctgagatggaactacgtcacaggaatttcaagggtgctcta
gaactgatgagacgtgccactgctgaaccaactgttgaggtcaaacggagagttgctgct
gatggaaatgaaccagtgcaaattaagctacacaaatctctaaggctttggttactgttt
gtggatttggaggagagtctaggaagcttagagtcaactcgtgtggtctatgagcgaatt
ttggatctcagaattgctacaccacagattataataaattatgcagtacttctggaggat
cacaagtactttgaggatgcattcaaggtttacgagaggggtgtgaagatcttcaagtac
ccacatgttaaggatatatgggttacctatctttccaaatttgtgaagagatatgggaag
tcaaagttggaacgagctagagagttatttgagcatgctgttgaacagacccctgctgat
gctgtgaagccattgtatcttcaatatgctaaattagaggaagactatggtcttgcgaag
cgggctatgagggtttatgatcaagctacaaaagctgttccagcaaatgagaaattgagc
atgtacgagatctatatagctcgtgcagctgagatatttggtgttccaagaacacgggag
atatatgaacaagcaattgagtctgggcttccagacaaggacgtgaaagttatgtgctta
aagtatgcggaacttgagaagagcctaggagagattgatcgtgctcgtgcactatacaag
cactcatcacaattcgcagaccctagatctgatcctgatttctggaacaagtggcatgag
tttgaggtgcagcatggtaacgaggataccttccgtgagatgctccgtgtaaagaggagt
gtatctgcaagctacagccagacacattttatcctaccggagtatctcatgcaaaaggat
cagatgcagacccttgaggaagcaaaggacgttttgaaaaaagctggtgttgctgatgat
gagatggcagctcttgagaggcagttagcgccccctgaaaatgatacaaagagcaaagaa
cagagtcgggtagttggatttgttagtgcaggagtagttgagtcaaatggacagaaagtc
actgcaaacaatgaggatattgagctacctgaggaaagtgattctgaagaggatgatgat
aaggttgaaattgcactgaaagaagtccctgatgcagtgtttggaggtctaatccgtaag
agggacgaaggtgatgaagcagaagacgactctactgccaagaataaagatagtgatggc
cctcttggcgcgctagaaagaatgaaacgaaggaaacaacaagcatcttag
DBGET
integrated database retrieval system
