Solanum verrucosum: 125834280
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Entry
125834280 CDS
T11474
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125834280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125834280
Spliceosome [BR:
sver03041
]
Complex B
Other components
Prp19-related factors
125834280
Complex C
125834280
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
RRM_occluded
zf-CCCH_10
RRM_YTH1
zf-CCCH_3
zf-CCCH
zf-CCCH_4
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
125834280
NCBI-ProteinID:
XP_049369403
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFFIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPDDESIRTLYVGGVDARIT
EQDLRDHFYAHGEIESIKMVVQRGCAFVTYTTREGAVKAAEELANKLVIKGLRLKLLWGR
PQVPKPESEVSDEARQQAALTHSGLLPRAVVSQQQNQPLQPPGTQDQPPSMPYFNIPPMP
QQDRPYYPSMDPQRMGAVIASQEGASSSTAGSGPGENKIGSDHQQGHRYAYPPGGPPPPG
QFYPPYYRPPYGYMPPPPPPYHQYPPPPYQATAPPPPSAQQSAHQQNPQPAAAATTQQP
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagagatgctgaagctgatggatgggaacgatctgatttccct
attatatgcgagtcgtgtctcggtgacagtccgtatgtgcgaatgacaaaagcagattat
gacaaggagtgcaagatctgcacgcgacccttcacagtgttcaggtggaggcctggtcgg
gatgcgagatacaaaaagtctgagatctgtcagacctgcagcaaattgaagaatgtttgt
caagtttgcctgttagatcttgaatatggtttgcccgttcaagtccgagacactgctctc
agtatcaactcaaatgatgccatcccaaaaagtgacgtaaatagagaatattttgcagag
gagcatgaccgcagggcaagagctggtattgattatgaatcttcatatgggaaagtccgt
gcaaatgatactatcttgaagcttcaaagaacaactccatactacaagagaaatcgggca
catgtttgcagtttcttcatacgtggtcaatgtacaagaggtttggagtgtccttaccgg
catgagatgcctgaaacaggggagttgtcacagcaaaatatcaaagaccgttactatggg
gtcaatgatccagtggctttaaagctacttaataaagcaggtgaaatgccttcattggag
ccccctgatgacgagagcattagaaccctctatgtgggtggtgttgatgctagaatcact
gagcaggaccttagggaccatttttatgcacatggtgaaattgagtccattaaaatggtg
gtccagcgtggttgtgcttttgtaacttacacgactagagaaggtgcggtgaaggcagct
gaggaacttgcaaacaagttggtgataaagggcctgagactgaagctactctgggggaga
cctcaagttcccaagccagagtccgaggtctctgatgaagcaagacagcaggctgctttg
actcacagtggtttgttgcctagagcagtcgtatcacagcagcagaatcagcctcttcag
ccaccaggcactcaggaccaacctccatccatgccttacttcaacatacctccgatgcct
cagcaagacagaccatattatccatcaatggatccacaaaggatgggtgccgtaattgca
tcccaggaaggggcatctagttcaactgcaggatctggtcctggtgaaaataaaatcggt
tctgatcatcaacaaggacaccgttatgcatatccacctggagggccaccacctcctggt
caattttacccaccttattatcgtccaccctatggatatatgccaccacctcctccacct
tatcaccagtatcctcctccaccatatcaagctacagcacccccaccacctagtgctcag
caatctgcgcatcagcagaaccctcaaccagctgcagcagcaaccacacagcagccttaa
DBGET
integrated database retrieval system
