Solanum verrucosum: 125835132
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Entry
125835132 CDS
T11474
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125835132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125835132
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125835132
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125835132
mRNA degradation factors
3'-5' decay
Ski complex
125835132
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
125835132
NCBI-ProteinID:
XP_049370226
LinkDB
All DBs
Position
Unknown
AA seq
1361 aa
AA seq
DB search
MDRLVAAKELSFRIGFTGHSGHLTIEPLPPVERDTPLNSIPDFILPPAFPKETPETIKEF
IREKYLLPQLDADEFSPEKVGRQWEFDWFERAKILPDPSLPRSVVVPTWEVPFRRQRDRL
DNGGWEPKSEERDVSELTIGADDSGALPRIVGPPKDFVRGSINSRPFRPGGLDDSPSLGR
VVPDGATNGGWVREVLNGGPAQTAPPSFKQGPDLGDLKDTHSCSWNIYEDQSAVMNTVEV
KLSDLSVQFDDLFKKAWQEDVTEFVGDGHTSELQSEAEQLPSVKPELLQVEAEVNKSEVS
DEGLDTEISVLDEILSVEAEGSISRLDGDKDGARQENDGWAVTGGSEVIVERFHDLIPDM
ALTFPFELDPFQKEAIYHLEKGNSVFVAAHTSAGKTVVAEYAFALAAKHCTRAVYTAPIK
TISNQKYRDFCGKFDVGLLTGDISIRPEASCLIMTTEILRSMLYRGADMIRDIEWVIFDE
VHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKKIHVTGTTKRP
VPLEHCLFYSGELYKVCENEEFLPHGFKAAKDVHKKKTASSVSGGASLRPGSSTAADKGR
GQRRDSSSQAKQHKHSGPQRFGNFGGGWGAQSTGPGQNVMGFRRSEVSLWLTLINKLLKK
SLLPVVIFCFSKNRCDKSADNIPGTDLTSSSEKSEIRIFCAKAFSRLKGSDRNLPQIVRI
QSLLHRGIAVHHAGLLPIVKEVVEMLFCRGLVKVLFSTETFAMGVNAPARTVVFDSLRKF
DGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEIPFENDLKHVIVGTATRLESQF
RLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKSVECIKGEP
AIEEYYDMYLEAEKYSHQIAEAVMQSPASQQYLTLGRAVVVKSQSAQDHLLGVVVKTPSS
NNRQYIVLVLTPELPSTLETSSDASNRKDQKNSEMQILVPKSRRGYDDEYCSSVTSRKGT
GAVNIKLPHRGNAAGMNYEVRGVDNKDFLYICVKKIKIDQVRLLEDVSAGAYSNTIQQLL
GLKSEGNMYPPALDPVKDLKLKDMNLVEAYYKWNNLLQKMAQNKCHGCIKLDEHMKLAKE
LELHRAEVNALRFEMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEE
LICTECLFENQLDDLEPEEAVAIMSSFVFQQKETSESFLTPKLSQAKKRLHETAIRLGEL
QAQFKLPIDPKEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGVIVRTIVRLDETC
REFRNAAAIMGNSALYKKMETASNVIKRDIVFAASLYITGV
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggatcggttagtagcagcaaaggaactatcttttcgaatagggtttacaggacacagt
ggtcacctcacgatcgagcctctccctcccgttgaacgcgatactcctctcaattctatt
cctgacttcattttgccacctgcatttccaaaggaaacacctgaaacaataaaggaattt
attagggagaagtatctgttgcctcagctggacgcagatgagttttctcccgaaaaagtc
ggaaggcagtgggagtttgattggtttgagagagctaaaatccttccagatccatctttg
cctcgatctgttgttgttcctacatgggaagtgccttttagacgtcagcgggacagattg
gataatggaggatgggaaccaaagtcagaggagagagacgtatcagaacttacaattgga
gctgatgattctggggcactaccgcgcattgttggaccaccaaaggattttgttagagga
agcattaatagtcgtccgtttcgacctggtggcttggatgattccccttcgctgggcaga
gttgttcctgatggtgctacaaacggtggatgggtaagggaggtgcttaatggcggtcct
gcccaaaccgctcctccaagctttaagcaaggacctgatcttggtgatcttaaggataca
cattcatgctcttggaatatatatgaggatcagagtgctgtcatgaacacagtggaggtg
aaactgagtgacttatccgtgcagtttgatgacttgttcaagaaagcttggcaagaggat
gtcacggagtttgttggagatggtcatacgtctgaattgcaatctgaagcggaacaattg
ccatctgtcaagccagagctacttcaggttgaagctgaagtaaacaagtccgaagtgtct
gatgagggtctagacactgagatatccgtcttggatgagattttgtctgttgaagcagaa
ggatcaatatcaagattggatggggataaagatggtgcacgtcaagagaatgacggatgg
gctgttactggtggcagtgaagtaattgtagaacgatttcatgatctcatccctgatatg
gctcttactttcccttttgaactcgatccctttcaaaaggaggccatctatcatcttgaa
aaagggaactctgtctttgttgctgctcatacatctgctgggaagactgttgtggcagaa
tatgcatttgctttggcagctaaacactgtaccagggctgtatatacagctccaatcaaa
acaatcagcaatcagaaatacagggatttttgtgggaaatttgatgttggccttctcaca
ggtgatataagcataagacctgaggcctcttgtcttataatgaccactgagatattaagg
tcaatgctttatagaggggctgatatgattcgggatatagaatgggttatatttgatgaa
gtgcattatgtcaatgatgttgaaagaggtgttgtttgggaagaagttatcattatgctt
ccaagacatatcaactttgtcctcctttcagctacggtacccaacacaattgaatttgca
gactggattggtcgtacaaaacaaaagaaaattcatgttactgggacgaccaaaagacct
gtccctttggaacattgtctcttctattctggggagctttacaaagtgtgtgagaatgaa
gagtttctgcctcatggatttaaagcagccaaagatgtacataagaagaagaccgcaagt
tctgtctctggcggcgccagcttgcgtcctgggtcttcaacagctgctgataagggtcga
ggacagaggcgtgatagctcttctcaggcgaagcagcacaagcattctggtccccaaaga
ttcgggaattttggtggtggttggggagcgcaaagcactgggcctggacagaatgttatg
gggtttaggagatcagaggtgtctttgtggttgacgctgattaataaactcttgaagaaa
tcactgttacctgtggttatattttgtttttcgaagaatcgatgtgacaaatcagctgat
aacatccctggtaccgatctcacaagtagctctgagaaaagtgaaattaggatattctgt
gctaaagcattttcgcggcttaagggatctgacagaaacttaccgcagattgtcagaatt
caaagccttctgcacaggggcattgctgtgcatcatgcagggctcctcccaattgtcaag
gaagttgtagaaatgcttttttgtcgaggtttggttaaggttctgttctcgacagagaca
tttgcaatgggagttaatgctccagccaggacggttgtttttgattctttaagaaagttt
gatggcaaggaatttaggcaactacttcccggagagtacactcagatggctgggcgtgct
ggaaggagaggacttgataaaactggtacagttgtggtgatgtgccgagatgagatccct
ttcgaaaatgatttgaagcatgtaatagttggtactgcaactaggcttgaatctcagttt
cgactgacctacatcatgattttgcatctacttcgggttgaagaactgaaggttgaggac
atgctgaaaagaagttttgctgaatttcatgctcagaagaaactacctgagcaacagcaa
ctcttgatgcgaaagcttgctcagcctacaaaatctgttgaatgcataaagggtgagcca
gcaattgaggaatactatgacatgtatttggaggcagaaaaatatagccaccaaatagca
gaagcagtaatgcagtcaccagcttctcagcagtaccttactcttgggagagcagtggtt
gtaaaatcacaatcagctcaagatcacttactaggcgttgtggtgaagacaccttcctct
aacaacagacaatatatagttctagttctgactccagaattgccttcaactctggaaact
tcgtcagatgcaagcaacaggaaagatcaaaaaaattctgaaatgcagatactagtgcct
aaatcaagacggggttatgacgatgagtattgttcgtcagtcacctcccggaagggaact
ggcgctgtcaacatcaaattgcctcaccgcggtaatgctgccggcatgaattatgaggtt
cgaggagttgataacaaggatttcttgtatatatgtgtgaaaaagattaagatcgaccaa
gttcggcttcttgaagatgttagtgcgggggcctactctaacacaatacaacagctgctc
ggtttgaaatctgaaggaaatatgtatcctcctgccttagatccggttaaagatctgaag
ttgaaagacatgaatcttgtggaagcatactacaaatggaataatctcttgcagaaaatg
gcacagaataagtgtcatggttgtattaaattggatgagcacatgaaattggctaaagaa
ttagagctgcaccgagcggaagtgaatgctttgaggtttgaaatgtcagatgaggcactt
cagcagatgccagattttcagggtcggatagatgtgttaaaagaaattggctgcatagat
gctgaccttgtagttcaaatcaaaggccgtgttgcttgcgaaatgaattccggagaggag
ttgatatgcacagaatgtttatttgagaatcaactagatgacctggaaccagaagaggca
gtggcgatcatgtcttcctttgtgtttcagcagaaggagacttctgaatcattcctcacg
ccaaagctttctcaggctaaaaagagattacatgaaactgcaataagacttggggagctt
caggctcagtttaagctaccgattgacccaaaggagtatgcccaagagaaccttaagttt
ggtttggttgaagtggtatatgaatgggcaaaggggaccccatttgctgagatttgtgaa
ctcacagatgtccctgaaggtgtaatagtgaggactattgttagattagacgagacttgt
cgggaatttagaaatgctgctgcaattatgggcaactctgcactgtacaagaaaatggaa
actgcatctaatgtgatcaagcgcgatatcgtgtttgcagctagcttgtatattactgga
gtttga
DBGET
integrated database retrieval system
