Solanum verrucosum: 125837169
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Entry
125837169 CDS
T11474
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125837169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125837169
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125837169
Spliceosome [BR:
sver03041
]
Complex C
Other components
Step II factors
125837169
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11_1st
KH_DEAH11
Helicase_C
DEAD
IBR
OB_NTP_bind
HA2_C
AAA_22
Rcat_RNF216
IBR_1
AAA_19
IBR_2
zf-C3HC4_2
KH_1
ResIII
zf-RING_UBOX
NAT10_TcmA_helicase
AAA_30
WHD_HA2
KH_Vigilin
ABC_tran
RsgA_GTPase
nSTAND_NTPase5
AAA_29
SLFN-g3_helicase
ATPase
Motif
Other DBs
NCBI-GeneID:
125837169
NCBI-ProteinID:
XP_049372269
LinkDB
All DBs
Position
Unknown
AA seq
1708 aa
AA seq
DB search
MQKRVSCPVTQSGYGFHRNSPEFSKRKIPNFTIQLRATPMNWKLNWQHLNNLIAKLPFTP
ENPSVVDSSFIVGTLSYVEWYQTLEVMVKLWELRLSGGHCCNPILKAKVELPSDREELNE
RLKGVFLEKLNRLINGVLVQTWQKKLGFVIDEIEKISMLLKKPNRVGVYQELWKKKKGIE
GERDLILLRIDEFKNGIKCIIDYLEDSKNYEDFKVFDFGEVIDWNRIHFIMMRECRRLDD
GLPIYGFRQQILQQILSQQVTVLVGETGSGKSTQLVQFLADSGIAGNGSIVCTQPRKLAA
NSLASRVREESQECYDDCSISCNPPHSSCQQFDSKVIFMTDHCLLQHYMGDKTLSNISCI
IVDEAHERSLNTDLLLALIKKLLHQRFDLRLIIMSATVDANQLAGYFFGCGTFHVAGRTF
PVDIKYVPCEDDAHHAVGAIASYVHDVIKMVTEIDRTEGAGGILAFLTSQSEVEWACEQF
KAPLAIALPLHGKLSYDDQNRVFLPYPGKRKVIFTTNLAETSLTIPGVKYVVDSGMVKES
RFEPGSGMNVLRICSVSQSSANQRAGRAGRTEPGKCFRLYSQSDFEDMPRHQEPEIRKVH
LGVAVLRILALGIKNVQDFDFVDAPSPKAIEMATRNLVQLGAVTQRDDASYELTAEGLKL
VKLGIEPRLGKMILSCFDQRLGKEGVALAAVMANSSSIFCRVGSEGDKLKSDCRKVQFCH
PSGDLFTLLSVYREWEIVPREKKNSWCWDNSINAKSMRRCHETVLEMEACLQNELNMILA
SYWRWHPQAHNKCDEVLQSIILSSLAENVAVYSGYDQLGYEVALSGKCVQLHPSCSLLNF
GQRPRWVVFGDVLASANEYLVCVTAFEFSSLVSLTPAPLFDFLKMDALKLEKKVLTGFGV
VLLKRFCGKSNSSINNLVSRIRTSYKDERIGIQVNVDENEVLLYASSRDMESVTFQVNDA
LEYESKLLRNECLEKCLFNGGSAASASVALFGAGAVIKHLELEKRCLTVDIFPSNGNAID
DKELLMCLERATSGNICMVHKYFGMGQDKEENKWGTVKFLTPDAAEQATLLNEVEFNGGF
LKMVPSRSIHSSDQKMFRSVLKAKVSWPRRYSKGVGFLRCDPMDVPLILDDISDLMIGGN
VIRCEASDKNPNNIVIARLDRDIAETEILEVLRATTNRRILDFFLVRGDSVENPPIATCE
EALRKEISPFMPKKVPFVNSVRVQVFQPKLTEYFAKAAIIFDGSLHLEAAKALEQIDGMV
LPGCLPWQKIRCERLFHSSVSCPAAVYHVIRNQLDSLLASLHRRKVGKCELQRNDNGSCT
VRISATATKVVADLRRPLEQLMKGKIVDHVDITPKVVQLLFSREGSNIMRTIQRETGTYI
YFDKHSLLVSIFGPLDNVDRAQHRFIGSLLALHENKQLEVHLRGGLLPHDLMKRVVQTFG
PDLSALKEKVPGAEFSLNTKRHCIYINGTKDMKQSVEDIISEIAQRSFPTQTTGDDADCP
VCLCELEDPYKLEACCHVFCRTCLLEQCESAIKSREGFPMCCLHQGCAEPILLADLKSLL
SIEKLEELFRASLGAFVAANGSTYRFCPSPDCPSVYRIADPDMVGAPFACGACYVETCTS
CHLEYHPYLSCETYQKVKDDPDCSLEEWSKGKDNVKKCPVCRFTIEKVDGCNHIECKCGK
HVCWVCLLFFDTSDNCYDHLRSVHRSIT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacgggtttcatgcccggtgacccaatcgggatatgggtttcaccggaattcg
ccggaattttcgaaacgaaaaatacccaatttcacaatccaactccgggcaactccaatg
aactggaaactgaactggcaacacctgaacaacttgatagcaaaattacccttcacccca
gaaaacccatcagttgtagactcaagttttatcgtcggaaccctatcgtatgttgaatgg
tatcaaacattagaagttatggtgaagttatgggagttaaggttaagtggtgggcattgt
tgtaatccaattttaaaagcaaaagttgaacttccatctgatagagaagagttgaatgag
agattaaaaggggttttcttggagaaattgaataggttaatcaatggggttttagtacaa
acatggcagaaaaaattgggttttgtgattgatgagattgagaaaatttctatgttgttg
aagaaacctaacagggttggtgtttaccaggagctgtggaagaagaaaaagggtattgaa
ggtgaaagagatttgatattattaaggattgatgaattcaagaatgggattaaatgtatc
attgattatttggaggattcgaagaattatgaggattttaaggtgtttgattttggtgaa
gtgattgattggaatagaattcattttatcatgatgagagaatgtagaaggcttgatgat
ggattaccaatatatggttttaggcagcagattctgcaacaaattctttctcaacaggtg
actgttttggttggggagactggatcaggaaagagtacacaattagtgcaattccttgct
gattcaggaatagctggcaatggttctatagtttgcactcagcctcgaaaacttgctgcc
aattctttagcaagtagggttagagaggaaagccaggagtgctatgatgattgctcgatc
tcctgtaatccaccacattcatcctgtcagcagtttgattcaaaggtgatttttatgaca
gatcactgcctattacagcactatatgggcgacaagactttgtccaacatatcatgcatc
atagtcgatgaggcacatgaaagaagccttaacaccgatcttcttttagcgttgattaag
aaactacttcatcagaggtttgatctgaggcttattattatgtctgccacagttgatgca
aaccagcttgcaggctacttctttggttgtggaactttccatgtggcgggtaggactttt
ccggttgatataaagtatgttccctgtgaagatgatgcccatcatgctgtaggtgcaatt
gcttcttatgtccacgatgttatcaagatggtgactgagatcgatagaactgagggagcg
ggaggtattttagccttcttgacatctcagagtgaagttgagtgggcttgtgagcagttt
aaagcaccactggccattgctttacctttgcatggcaagttatcctatgatgaccaaaac
cgagtgtttctcccctatccagggaagagaaaggttatattcaccaccaatctagctgag
acatcactgacaatccccggtgtcaaatatgttgttgattctggcatggttaaagaaagc
aggtttgaacctggctctggcatgaatgttctcaggatatgcagtgtgagccaaagttct
gctaaccaaagagccggtcgtgcagggagaactgaacctggaaagtgtttcaggctgtac
tctcaaagtgattttgaggatatgcctcgtcatcaggaacctgaaattcggaaagttcat
cttggtgttgcagtgctgaggattcttgctttaggtatcaagaatgtgcaggattttgat
tttgttgatgcaccgagccccaaagctattgagatggccacccgaaatctggttcaacta
ggagctgttacacaaagagatgatgcatcatatgaattaactgcagaaggactaaaactg
gtgaagttgggtattgaacctcggttgggaaaaatgatcctgagttgctttgatcaacgt
ttgggtaaagaaggtgttgcgcttgctgccgttatggcaaattccagcagcattttctgt
agggtcggttctgaaggagacaaactaaaatctgattgccgcaaggtgcaattttgccat
ccaagtggggacctctttactttactatctgtttacagggaatgggagattgtgcctagg
gaaaagaagaatagctggtgttgggataatagtatcaatgccaaatccatgagaagatgc
catgagacagtgctggaaatggaagcctgtcttcagaatgagctaaatatgatcttagcc
agttactggcgctggcatcctcaagcgcataacaagtgtgacgaagtattgcaaagtata
attctttcttcacttgcggaaaatgttgctgtgtactcaggttatgatcagcttggttat
gaggttgcgctatctgggaagtgtgtccaactacatccttcctgttcgcttttgaatttc
ggccaacgaccacgttgggtagtctttggggatgtccttgcatcagctaacgagtatctg
gtctgtgtgactgcatttgagtttagttctcttgttagcctcactcctgctcctttgttt
gattttctgaagatggatgcactaaagttagaaaagaaggttttgacaggctttggagtc
gtgctactcaaaagattttgtggaaaatctaacagtagcattaacaatcttgtctcgcgc
attagaacttcttataaggatgaaaggataggcattcaagttaatgttgatgagaatgag
gttcttttatatgcttcttcaagagacatggagagtgttacattccaggtaaatgatgct
ctagagtatgaaagtaagctgttgcggaacgaatgcttagagaaatgcctattcaatgga
ggatcagcagcttcggcctctgttgctctctttggagctggtgctgtgataaagcatttg
gagcttgagaagagatgtttgactgtggacatatttccttcaaatggaaatgccattgat
gacaaggaattgctgatgtgtttggagagagccacatctggtaatatttgtatggtgcac
aagtactttggaatgggccaggacaaagaggagaacaagtggggcacagtaaaatttctt
acccctgatgctgcagaacaggctacattattaaatgaagtggaatttaatggtggcttt
ctgaaaatggttccatccaggagcatacacagtagtgatcaaaagatgtttcgctcagtt
ctcaaagctaaagtttcttggcctcgtaggtacagtaaaggagtaggctttctgagatgc
gaccctatggatgttcctttaattttagatgacatctctgatctcatgattggtggaaat
gtcatccgttgtgaggcaagcgataagaaccctaacaacatagtcattgctagacttgat
agggacattgctgagacagagatacttgaggtgttaagggcaacaacaaataggagaatt
ctggatttcttcttggtgagaggagattctgtagaaaatcctcccatagctacttgtgaa
gaagcacttcggaaagaaatatctcccttcatgcctaaaaaggttccgtttgttaactct
gttcgtgtccaggtcttccagccgaaactaactgagtatttcgcaaaagcagctataata
tttgatggatctcttcatcttgaagcagccaaggccttggagcaaatcgacggcatggtt
ttgcctggatgccttccctggcagaaaataagatgtgagcgactgtttcacagctctgtt
tcctgtcctgcagcagtttatcatgtcatcaggaaccagctggattctttacttgctagc
ctccaccgaagaaaggttgggaaatgcgagctacagagaaatgataacggttcctgtaca
gttaggatatctgccactgccaccaaagttgtggcagatttgagaaggccactggagcaa
cttatgaaaggcaagattgtagatcacgtggatattactccaaaggttgttcaacttctg
ttctctcgagaaggaagcaacattatgaggacaattcaacgggagacaggaacctatatt
tattttgacaagcatagcttgcttgttagtatctttggtcctttagacaatgttgatagg
gctcaacacagatttattggttcccttctggcgctacatgaaaataaacaacttgaggtg
catcttcgtggaggacttttgcctcatgacctgatgaaaagagttgttcagacatttgga
ccagaccttagtgcacttaaagaaaaggtgcctggggcagagttctctctgaacacaaag
cgccattgcatctatatcaatggtactaaagatatgaagcaaagcgttgaggacataatc
tctgaaattgctcaaagaagttttccaactcaaacgacaggagatgatgctgactgtcct
gtttgcttgtgtgaactggaggatccttataaacttgaagcttgctgccatgtattctgt
cggacatgcttgctagagcagtgtgagtctgcaatcaaaagccgggaaggtttccccatg
tgctgtcttcatcaaggttgtgcggaacccatcctgcttgctgatttgaagtctctattg
tcaattgagaagttggaagaacttttcagggcttctttgggggcttttgtggcagccaat
ggtagtacctaccgcttttgcccctcaccagattgcccttcagtttatcgcattgcagat
cccgatatggttggtgctccttttgcctgtggcgcatgctatgtggagacatgtacgagt
tgtcacctggagtatcatccttacctctcctgtgagacgtaccagaaggttaaagacgac
ccagattgctctctagaggaatggtccaaggggaaagacaatgtaaagaaatgccccgtt
tgcagatttacaattgagaaggtggatggctgcaatcatatcgagtgtaagtgtgggaaa
catgtttgctgggtttgcttgctcttctttgacaccagtgataattgctatgatcatttg
aggtctgttcaccggtccattacatga
DBGET
integrated database retrieval system
