Solanum verrucosum: 125837872
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Entry
125837872 CDS
T11474
Name
(RefSeq) chromatin structure-remodeling complex protein SYD isoform X1
Organism
sver Solanum verrucosum
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
ResIII
DEAD
DEAD_2
Motif
Other DBs
NCBI-GeneID:
125837872
NCBI-ProteinID:
XP_049372896
LinkDB
All DBs
Position
Unknown
AA seq
3328 aa
AA seq
DB search
MTNPNNVELEAAKFLHKLIQESKDEPTKLATKLYVILQHMRSSGKESSMPYQVISRAMET
VVKQHGLDIEALMSSRLPVSAATQAGEAASSQVAGSSQRPGVTRDSKANFLGNEMVSGPS
GSGHGIYQASAPHISGTGVKLPVMAPPASNSSQPVEAGISSPMQFGSPSIDNHGYAAKLH
KDGSTEPFSGPTSADLVVGRTAAGRALEHEGGSNMLGNASKISQGGMPNNVPEKSILRSE
TIRDAGMLSVAAQAPVSTMPFKEHHLKQLRAQCLVFLAFRNGLMPKKLHLEIALGNFYPK
EDRRELVDHKGREQLVTDQGSASEVTRTFGGAGETDRLSSGPTPSGILTDTNSSMEAENA
NLMEDKNGQLDPSEHADERRPQRKMRMIQDAEMSIQDATESQASALRGVPTDPKSFPPYN
HENAPANTEQLGMFPQASSVMGTSKQMKPDLSGRSGTDASKVSPPASANTHGSGLLVRDN
HTGYSQNLVDSNAQGNRHADSNLPSLPLRQQWKSVPGVINQSPTMMQVKDSNITLKNLSQ
VQETDQEDDNISASTDRLSSPRHTMLEKWILDQRKRKLISEQKWSKKQQKTDERIAASAE
KLKESVSSSEDISAKTKSVIELKKLQLLELQRRLRSEILYDFFKPVATDMERLKSIKKHR
IGRKSKQFERYEQRMKEERQKRFRERQKEFFSEIEVHRERLEDVFKMKRERWKGFNKGAK
EFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVNKLLKETEKYLQKLG
SKLKEAKSIARKFETDMGDNRNSGVVEEDEIDFGDADETDQAKHYLESNEKYYLMAHSVQ
ETIAEQPSSLKGGKLRGYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLMCYLMET
KNDRGPFLVVVPSSVLSGWESEINFWAPDMLKIVYSGPPEERRKLFKERIVHQKFNVLLT
TYEYLMNKHDRPKLSKVHWHYIIIDEGHRIKNASCKLNADLKHYRSNHRLLLTGTPLQNN
LEELWALLNFLLPNIFNSSEDFSQWFNKPFESGDSSPDEALLSEEENLLIINRLHQVLRP
FVLRRLKHKVENELPSKIERLVRCEASSYQKLLMKRVEDNLGAFGTSKARSVHNSVMELR
NICNHPYLSQLHVEEVHELVPKHYLPTFVRLCGKLEMLDRLLPKLKATDHRVLLFSTMTR
LLDVMEDYLCWKQYKYLRLDGHTCGGDRGALIDKFNQPNSPFFIFLLSIRAGGVGVNLQA
ADTVIIFDTDWNPQVDLQAQARAHRIGQKKDVLVLRLETVQTVEEQVRAAAEHKLGVANQ
SITAGFFDNNTSAEDRREYLEALLRESKKEEDAPVLDDDSLNDLIARSEPEIDIFESVDR
RRREEEMEIWKKLCLESGTQSSELIPPLPSRLLTDDDLKPFYEAMKISDKPVVAPSPGLK
RKGQSLGGLDIQHYGRGKRAREVRSYEEQWTEEEFEKMCLAESPQSPSLKEEIQEKNSPS
ASGTCPDPVVAKSEIQTPAPYQPPLQQPVQELSQQPVQELPQQHVGPIVQQSPVTVTPPS
KRGRGRPRRTAIVTEISPSPVVISAIAASVKVDSNTIAENTSTSQATSGPVSVSFPCASS
IESTSATILQNVTGVAPSHQSIVPSVAVVSQSGPPCPPTSGQGRGRGRGRGRGRGRKPQT
GGEAPGRRGKQQNVTAEAFPTPPTQAVSEPVSAAQGVNDMSSTHHMPPTPPAVGEPDLVP
QVVAGLGSKNLGHAPVSMRDASKELNSVVPLAASSSSKELTPVSTVSVIPSSAASQDPSS
ISPPGVLQSSSRNHSDHLSLSAAQTEATLQVNSISVVPHSSPSAGKETSSVSPVPLHSLT
SKDSNSVVPTLVPASSSACVELSSVCPLPAVAPSSSIGTNTSALTPLLLASNAAGKLDYG
SDRMTLSCSSSISGHNSVCDSSNLKSTCQQESGVVTAHTSDPVPPLPVISSVSQYSTPPT
APKPGRGRGRKAQTGSEASRRRGKRQDLVTAAVTEGLSAQDPRLIEPPQKRTRLSVGRKP
TTRSKRENESQQVVDQSVASQKTPDFAGGEISKNMVSSEVNPHNSAINRDASQSHAIPVP
SQMGDNLNGDVATAEDPLDDAQQKENVVQSVTSKSCSSPHVEPQINTVNSDDSPSQEQTA
IVQLDASQKIPYPGTGQIPQAMACCEVELHSNSIKSDESQASGDVPSCEVATTKEVLSEG
QQTMKVQSAASQTPSVHSVGKMPEDIGCEVSTTKEVLTEDQQTMKVQSAASQTPSVHSVG
KMPEDIVSNEVLPQCDAIQTDASQSHVTLASSGSMAPVTDCPVEKSEGNSKGDDGEKTET
NSIDGSNMEVPIGALELTSSDDLNKSGDAEGKTSSSLSGVLPTSSELVPRPSTETEVYLG
SVGSGKVSFNSGSTQSLSESVSAKTDVEQLQTEDLPLDKSFVSKAEAASTEHLAGGILGK
EQETGDTMEETVVSPAVETDNLNMKGIASFTSPSTEAESLVDEPPVCGSYEPAKDKLEKT
AEGTHSDKGAMAEVCEQDKLSVNVSLETTKGLSRGEKEKYRIPETFEKQVNVAESLTEEC
GKDLAAHGPEMKDSDVSEVAPSPRNESESSFTVGTSQRTFEEQVNVAESLTEECGSDLAA
HSPEMKDSDVSEVAPSPRNESQSSFTVGTSQSEPERQAIAEANLHPSISETSPSTESGAQ
KESLSPKLASNAEPVEALTETFASRHDTNYVAELQGNLSFDVKDDLSNSEVDVSQLCPAD
GSSENHPELEQVVVEDMRTNICEESASDEVDDIVLRQTEKADGQCHDGLSVETHESKRAE
DKVDVLNGELNKHLSSTIAGTSKKVADLELVAEENTGKINDGSEDAGQVAEKSEDMAIRD
LTVEGQESKETDATGDTSTSKNEVESQSAVVENIGRMYNKSVVSGEVTADELLIEGSEHL
HVLDHAIEVQGNKAFDATRDASESNSELNEAQPGGTYQIGSELQLVAEQDSETMNKKITL
PDATAVEPQPAVSENLSIQDPAHQGPKNQTSDPTEDFSTLNNELNESQPKAADVTCEIAA
ESHLVSKQNIEIHVEVATGDVIAKNAAVGKSENFPSIDVAVEEKGKKESDVTYEISDSEL
KEPKTSQTTIEVKTHTICEESGMTDKDVTAENAAVGKSENFPSIDVAVEEKGKKESDVTD
GISDSELKEPKTSQSTIEVKTHIVCEELGMTDKEVAPLEVETPFRDLSGSSGRDLAVEGQ
EKEKSAASKNVSSPENEEHKCSPGARAAYNGAESQLVAERDSETVLTKEVFSGKEEISSI
KLAGDEDVPTAIEYGDQELSSATGAGDD
NT seq
9987 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatccaaataatgttgagctggaggcagcaaagtttctgcacaagcttattcaa
gagtctaaggatgagccgactaaattggctacaaagctttatgtgattttacaacatatg
agatccagcgggaaggagagctcaatgccttatcaagtaatatcaagggcaatggagact
gtcgtcaagcaacatggtcttgacattgaggctttaatgtcctcgcgtcttcctgtgtct
gctgcaacacaagcaggagaagctgcatcatcacaagtagctggatcttcacagaggcca
ggggttactagagactctaaagcaaattttctgggaaatgagatggttagcggtccaagc
ggcagcggacatggtatttatcaagcatctgcaccccacataagtggtacaggtgtcaaa
cttcctgtaatggcgcctcctgcttctaattcatctcagccagtagaggcaggaatttca
agtccaatgcagtttggaagtccttcaattgataatcatggttatgctgcaaaattgcac
aaagatggaagcacagaacctttctctggtcccacctcggctgatcttgttgttggcaga
actgcagcgggaagagcactagagcatgaaggaggatctaatatgttaggaaatgctagc
aagatcagtcaggggggcatgcccaacaatgtcccagagaagagtatacttagaagtgaa
acaatcagagatgcagggatgttgtctgttgctgctcaggctcctgtatctaccatgcct
ttcaaagaacatcatttgaaacagcttagggcacaatgtcttgtgtttttggcttttagg
aatggtttaatgccaaagaagcttcatcttgaaattgcacttggaaacttctatccgaaa
gaagatcgcagagaattggttgaccataaaggaagggagcaactggttactgaccaaggc
agtgcatctgaagtcacacggacatttggaggagctggcgaaactgacaggctttcttct
ggtcctacaccttctggaattcttactgatacaaattcgtcaatggaggctgagaatgca
aacttgatggaagataaaaatggtcagcttgatccttctgagcatgctgacgaaaggaga
cctcaaagaaaaatgagaatgattcaggatgctgaaatgtccatccaggatgctacagaa
tcacaggcatctgctcttagaggagttccgactgatccgaaatcctttcctccctataat
catgagaatgctcctgcaaatactgaacaacttggaatgtttcctcaagcttcctctgtt
atgggcacaagcaagcaaatgaagcctgatctgagtggtaggagtggaactgacgcttca
aaggtatcaccacctgcctctgccaatacccatggatcgggtctgctagtgagagataat
catactggttattctcaaaatcttgttgatagcaatgctcaaggaaatcgacatgctgat
agtaacttgcctagtttacccttgaggcaacagtggaaatctgttcctggagtaattaat
caaagtcctacaatgatgcaagtgaaggattcaaatataacgctgaaaaatctgtctcaa
gtgcaagaaacagatcaagaggatgataatatttcagcatccacagataggttatcatct
ccaaggcatacaatgctggagaaatggattctggatcaacggaaaaggaagcttattagt
gaacagaaatggtcgaaaaaacagcaaaaaacagatgaaagaattgctgcttctgctgag
aagttgaaggaatctgtgagctcctctgaggatatctctgcaaaaacaaaaagtgtcatt
gagctgaaaaagcttcaattgctggagctgcagcgtcgtttacggagtgaaattctctat
gattttttcaagccagtagcaactgacatggagcgtttaaaatcaatcaagaagcacaga
attgggaggaaatcaaagcaatttgaaagatatgaacaaagaatgaaggaggaacgtcaa
aagagatttcgtgagagacagaaggagtttttcagtgagattgaagttcatagggaaaga
ttggaagatgtattcaaaatgaagagagaacgctggaaaggtttcaataagggtgcgaag
gagttccataaaaggaaggaacggatacatcgtgagaagattgacaggatccaacgtgag
aagattaatttactgaaaatcaatgatgttgagggataccttcgaatggttcaggatgca
aagtcggatcgtgttaacaaactactaaaagagacggaaaagtacctccaaaagcttgga
tccaaattaaaggaggccaaatcaattgcaagaaaattcgagaccgacatgggtgacaat
agaaactcaggtgtggttgaggaggatgaaattgactttggtgatgcggatgaaacagac
caggctaagcattacttggaaagcaatgaaaaatactatttgatggcacatagtgtacag
gagaccatcgcagagcagcctagttctctcaaaggtggaaaattacgggggtaccaaatg
aatggattgcgatggttggtttcactctacaataaccatttgaatggaattttagctgat
gaaatgggcctcggtaaaactgttcaggttatatcccttatgtgttacctgatggaaacc
aaaaatgacagaggaccttttctggtggtagtgccatcctctgtcctatccggatgggag
tcagagataaacttttgggcaccagatatgctcaagatagtttattctggaccaccagaa
gagcggaggaagcttttcaaggaaagaattgttcatcaaaagttcaatgttcttttgacg
acatatgagtatttaatgaacaaacatgatagaccaaaactaagtaaagtgcattggcac
tatatcataattgatgaagggcatcgcataaaaaatgcttcttgcaagttgaatgctgat
ctgaagcactaccgcagtaatcataggttactgttgacgggcactcctcttcagaacaat
cttgaggagctctgggcactacttaacttccttttgccaaatatcttcaattcatcagaa
gacttctcacaatggtttaacaagccatttgagagcggtgacagctcacctgatgaagct
ttgctctcagaggaggaaaatcttttgatcattaaccgtctgcaccaagttttgcgtcca
tttgttcttaggagattgaaacacaaggttgagaatgaattgccttcaaagattgaaaga
ctggttagatgtgaagcttcttcgtatcagaagcttttgatgaagcgagtggaagacaac
cttggtgcattcggaacttcaaaggctcggtcagtccacaattctgttatggagctgcgc
aacatttgcaatcatccgtatcttagccagcttcatgtggaggaggttcatgagctagtt
cctaagcattatctgccaacctttgtgagactttgtgggaagcttgagatgttggacaga
ttactgcctaaacttaaggcaacagatcaccgggtcttgcttttctcaacaatgaccagg
ctgcttgatgtaatggaagattatctctgctggaagcaatataagtaccttcgcttggat
ggacatacgtgtgggggtgacagaggtgcccttattgataaattcaatcagcctaattct
cccttctttatatttctgttgagtattcgtgctggaggtgttggagtaaatcttcaagct
gctgatacagttataatttttgacacagattggaatcctcaggttgatcttcaagcacaa
gcaagggctcataggataggtcaaaagaaggatgttcttgttcttcgattagaaacagtc
caaactgttgaggaacaagtaagagctgctgctgagcataaacttggagttgctaaccaa
agcattactgctggattctttgataataacacaagtgcggaagaccgaagggagtacttg
gaggccctcttgcgagaaagcaaaaaagaggaagatgcacctgttcttgatgatgattct
ttgaatgatcttatagcacgaagtgagccagagattgatatatttgaatcagttgacagg
agaaggcgtgaagaagagatggaaatctggaagaagttatgcttagaaagtggaacacaa
agttcagaactcattcctcctttgccctctcgacttcttactgatgatgacttgaaacca
ttctatgaagcaatgaaaatatctgataagccagttgtggctcctagccctgggttaaaa
aggaagggtcagagtcttgggggtcttgatatccaacattatggacgtggaaaaagagca
agagaggttcgttcgtatgaagagcaatggactgaagaggaatttgagaaaatgtgcctt
gctgagtctcctcaatcacctagtctaaaggaagaaattcaagaaaagaattccccttca
gcctctggcacttgtcctgaccctgttgttgccaaaagtgaaatacaaaccccagcaccg
tatcagcctcctctccagcagcctgtgcaagaactttctcaacagcctgtgcaagaactt
ccccaacaacatgttggacccatagttcaacaaagccctgtgactgtgactccgccatct
aaacggggccggggaagaccaaggaggacagcaatagtgactgaaatttcaccgtcccct
gtcgttatttcagcaattgcagctagtgtaaaggtggatagcaataccattgcagaaaat
acttctactagtcaggcaacttctgggcctgtttctgtgtcttttccttgtgcttcttcc
atagaaagtaccagcgcaaccatcctacagaatgtaactggtgttgctcccagccatcag
tcaattgtaccttctgttgctgttgtttctcagtctggtcctccttgccctcctacaagt
ggacagggaaggggccgaggtagaggccgaggccgaggtcgaggtcgaaagcctcaaact
ggaggagaagctccagggcgtagaggaaaacaacagaatgttacagcagaggctttcccc
acccctccaactcaagcagtaagtgagcctgtctctgcagcgcaaggtgtgaatgatatg
agttctactcaccatatgcccccaacacctcctgcagtgggtgagcctgatctggtgcca
caggtggtggcaggtttgggttcaaaaaaccttggtcatgctcctgtttccatgagagat
gctagtaaggaactgaattcggttgtgcctcttgcagcatcttcctctagcaaagaatta
acccctgtttcgactgtttctgttattccatcatctgctgccagtcaggaccctagttca
atttcacctccaggtgtccttcaatcatcctccagaaaccattcagaccatctttccctc
tctgctgcccagaccgaagctactctgcaggtgaattcaatttcagtagttcctcatagt
tcaccttcagctggcaaggaaacgagttctgtgtcacctgttcctcttcattcattaact
tcaaaggactccaattcagttgtacctactcttgttcctgcatcatcgtctgcttgcgtg
gaactaagttcagtttgccctcttcctgctgttgcaccctcttccagcataggtacaaat
acatctgcacttactcctcttcttttagcatctaatgcagcaggcaaattagattatgga
tcagataggatgacattgtcctgctcttcttctatttcaggtcataattctgtatgtgat
tcttctaacttgaagagcacttgtcaacaagaatctggtgtagtaactgctcatacttct
gatccagttccaccattgcctgtgatttcatcagtttcacagtatagtactcctcccact
gcacctaagccaggtagaggacgaggacgcaaggctcaaactggaagtgaggcatcacgg
cgcagggggaagagacaggatttggtcactgcagctgttactgaagggttaagtgctcag
gatccaagattaattgaacccccacaaaagagaaccaggttatccgttgggaggaagccc
actacaagaagcaagcgtgagaatgaatctcaacaagtagtagaccaatcggttgcatct
caaaagactccagattttgctggtggggaaatttctaagaatatggtttctagtgaagtt
aatccacataacagtgcaatcaacagagatgcatctcaatcccatgctattccggttcct
agtcaaatgggtgataatctaaatggtgacgttgctactgctgaagatcctctcgatgat
gctcagcaaaaggagaatgtggtccaatctgttacatctaaaagttgctctagtcctcat
gttgagccgcagattaacacggtcaactctgatgattctccttcccaggaacaaacagct
attgtccagttagatgcttctcaaaagattccatatcctggcacaggacaaatccctcaa
gctatggcgtgttgtgaagttgagctacatagcaattctatcaaatccgatgaatcacaa
gccagtggcgatgttcctagctgtgaagttgccacgacaaaggaagttcttagtgagggt
caacaaacaatgaaggttcagtcagctgcatctcagacaccttcagttcactctgttggg
aaaatgcctgaagatataggttgtgaggtttccacgacaaaggaagttctcactgaggat
caacaaacaatgaaggttcagtcagctgcatctcagacaccttcagttcactctgttggg
aagatgcctgaagatatagtgagtaatgaagttctgccacagtgtgatgctatacaaaca
gatgcatctcaatcccatgtcactcttgcctcttcaggatcaatggctccggttactgat
tgcccggttgaaaagagtgaaggtaattctaagggtgacgatggtgaaaagactgagact
aattctatagatgggtcaaacatggaagttcccattggagctttggagcttacatcatct
gacgatctgaacaagagtggagatgcagaagggaaaactagcagcagtttaagcggggtc
cttcccacaagttctgagttagttccccgtccaagcacagagacagaggtatatctgggt
tccgtaggctccgggaaagtaagttttaattcgggatcaactcaaagcctgtctgagagt
gtgtctgcaaaaactgatgttgaacagttacagactgaggatcttcctctggataaatca
tttgtttctaaagctgaggcagccagcactgagcatctcgctggtggcatacttggaaaa
gaacaggaaaccggagacaccatggaggagactgttgtttcacctgctgtggagactgac
aatctgaatatgaagggaatcgcatcatttacttctccatctactgaggcagaatcttta
gtggatgaacctccagtatgtggatcttatgaaccagccaaggacaaacttgaaaaaaca
gcagaaggaacacattccgataaaggtgcaatggccgaggtttgtgaacaagataagtta
tcagttaacgtgtcattggagacaactaaaggtttaagtaggggggagaaagaaaaatat
aggattccagaaacttttgagaagcaagttaatgttgctgaatccctaacagaagaatgt
ggaaaagatcttgcagcacatggtccagaaatgaaagattctgatgtaagtgaggttgca
ccaagccctagaaatgagtccgaatccagttttactgttggaacatctcaaagaactttt
gaggagcaagttaatgttgctgaatccctaacagaagaatgtggaagtgatcttgcagca
cacagtcccgaaatgaaagattctgatgtaagtgaggttgcgccaagccctagaaatgag
tcccaatccagtttcactgttggaacatctcaaagtgaacctgaacgacaagcaattgct
gaagcaaacttgcatcccagtatttccgagacttctcccagcacagaatctggtgcccag
aaggaatccctttcacctaagcttgcttcaaatgctgaacctgttgaggctctaacagaa
acgtttgccagccgtcatgacacaaattacgtagctgaattacagggtaacttgagtttt
gatgtaaaggatgatctttctaattctgaagttgatgtgtctcaactctgtccagctgat
gggtcatctgagaatcacccagaattagaacaggttgtggtggaagatatgagaactaac
atttgtgaggagtctgcttcagatgaagttgatgatattgtactgcggcaaacagagaaa
gctgacggtcagtgtcacgatggtttgtctgttgagactcatgagagcaaaagagctgag
gataaggttgatgttttaaatggtgaattaaataaacatctatccagcacaattgctgga
acatctaaaaaggtggcagatctggagttagttgccgaagagaacacagggaagataaat
gatggctcagaagatgcaggtcaggtggcagaaaagtccgaggatatggcaatccgagat
cttactgttgaaggacaagagagtaaggaaactgatgccacaggagatacttcaacatca
aaaaatgaggtggaatcacaatctgctgttgtagaaaatataggaaggatgtataacaag
tcagtagtatcaggggaggtaacagctgatgaacttctgatagaagggtctgagcatttg
catgtcctagaccatgcaattgaagtacaaggtaacaaagcatttgatgccactagagat
gcttcagaatcaaattctgagctaaatgaagctcaacctggtggaacatatcaaattggg
tcagagttacagttggttgcggaacaagactctgagacaatgaacaagaagattacttta
cctgatgctacagctgttgagccccaaccagctgtctctgagaatttgagtattcaagat
cctgcacatcaaggaccaaagaaccaaacatctgatccaactgaagatttttcaacttta
aataatgaacttaatgaatctcaaccgaaagctgcagatgtaacttgtgaaatagcagcg
gagtctcatttggtttccaaacaaaacatagaaatccatgtggaggttgctacaggggat
gttatagccaagaatgctgcagtagggaagtctgaaaattttccatcaatagatgttgct
gttgaagaaaaagggaagaaagaatctgatgtaacatatgaaatttctgattctgaactc
aaagaacctaaaaccagtcaaaccacaattgaagtgaagacacatacaatatgtgaggag
tcgggaatgactgacaaggatgttacagctgagaatgctgcagtaggtaagtctgaaaat
tttccgtcgatagatgtggctgttgaagaaaaagggaagaaagaatctgatgtaacagat
ggaatttctgattctgaactcaaagaacctaaaaccagtcaatccacaattgaagtgaaa
acacacatagtatgtgaggagttgggaatgactgacaaggaggtagctccacttgaagtt
gaaactccattcagagatttgtctggttcttctggcagagacttggcagttgaaggacaa
gaaaaagagaagtctgctgcaagtaaaaatgtttctagccccgagaatgaagagcataaa
tgtagtccaggtgcaagagctgcttataatggggcagaatcacaattggttgctgagagg
gactctgagacagttctgaccaaggaagtattttcaggcaaagaagagatctccagtatc
aagctagctggtgatgaagatgtgccaactgctatagagtatggtgatcaagaactatcg
tctgctacaggggctggtgatgattaa
DBGET
integrated database retrieval system
