Solanum verrucosum: 125838955
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Entry
125838955 CDS
T11474
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sver Solanum verrucosum
Pathway
sver03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125838955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sver03019
]
125838955
03036 Chromosome and associated proteins [BR:
sver03036
]
125838955
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125838955
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
125838955
mRNA degradation factors
5'-3' decay
Decapping complex
125838955
Chromosome and associated proteins [BR:
sver03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125838955
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
125838955
NCBI-ProteinID:
XP_049373910
LinkDB
All DBs
Position
Unknown
AA seq
491 aa
AA seq
DB search
MNPRGRYPPPGMGGGGGGGGRGGGHMYPNANPNFQPRNPQQYVQRGPVNQQQLFQNQQTQ
QWLRRNQLASDSTVDEVEKTVQSEAVDQSSQDWKARLKIPPADTRYRTEDVTATKGNEFE
DYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID
QDVNAIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLV
GTPGRILDLARKGICVLKDCSMLVMDEADKLLSPEFQPSIVQLIRFLPANRQVLMFSATF
PVTVKDFKERYLQKPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIF
CNSVNRVELLAKKITELGFSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI
QAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQI
PPHIDQAIYCL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagaggaagatatccaccgccgggaatgggcggcggcggtggaggcggcggc
cggggtggcggacacatgtaccctaacgctaaccctaattttcaaccgagaaatccacag
cagtatgtgcagagaggtccggtgaaccagcagcagctgtttcagaaccaacagacacag
caatggctcagaaggaaccagttggcatctgattctactgttgatgaggttgaaaagacg
gtacaatctgaagcagttgaccaaagttcacaagactggaaggcgaggttgaagatacca
ccagcggatactagatacaggacagaggatgtgacagcgaccaagggaaatgaatttgaa
gactattttcttaagcgtgaattgcttatgggaatttatgaaaagggttttgaaagacca
tctccaatccaggaagagagtatcccaattgctcttactgggagtgatattttggctagg
gccaaaaatggaacagggaaaactgctgccttctgcattccggcattggaaaaaattgac
caggacgtcaatgccattcaagttgttatccttgttcctacgcgagaattggctcttcaa
acatctcaagtttgcaaagaacttgggaagcacttaaaaattgaagtcatggttaccact
ggggggaccagcttgaaggatgatataatgcgactctatcaaccggttcatttactagtt
ggaacccctggaagaatactcgaccttgcgagaaagggaatatgtgttttgaaagattgt
tccatgcttgtcatggatgaggctgataagcttctttctccggagtttcaaccttccatc
gtgcagctgattcgtttcttgccagcaaatcgtcaagttttaatgttctctgctacattc
cctgtcacagtcaaggactttaaagaaagatatctgcagaagccatatgttatcaacctt
atggatgaacttactctcaagggtataacacaattttatgccttcgtagaggaaaggcag
aagcttcattgcctcaacactttattctcaaagcttcaaatcaaccaatcaattatcttt
tgcaactctgtaaaccgtgtggaactgcttgccaagaagatcacagagttaggcttttca
tgcttctacatccatgcaaagatgcttcaagatcataggaacagagtatttcatgacttc
cgtaatggtgcctgcaggaaccttgtttgtactgatctgtttactagagggatagatatt
caagcagtcaatgttgttataaattttgatttcccgaagaactcagagacatatttacac
agggttgggcgttcagggagatttgggcatcttggtttagctgtgaacctgattacttat
gaggatcgcttcaacctgtatagaattgaacaagaactaggaacagagatcaagcaaatt
cctccgcacatagatcaggctatatattgcctttga
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integrated database retrieval system
