Solanum verrucosum: 125840714
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Entry
125840714 CDS
T11474
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
sver Solanum verrucosum
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sver03041
]
125840714
03009 Ribosome biogenesis [BR:
sver03009
]
125840714
Enzymes [BR:
sver01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125840714
Spliceosome [BR:
sver03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125840714
Ribosome biogenesis [BR:
sver03009
]
Eukaryotic type
90S particles
Helicases
125840714
Pre-60S particles
125840714
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
SNF2-rel_dom
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125840714
NCBI-ProteinID:
XP_049375637
LinkDB
All DBs
Position
Unknown
AA seq
666 aa
AA seq
DB search
MLAAPRPPSLTVGCFKFQKPSANVNLVQRNVGSSNCKRVVVAAKATYSRVPLDTPGAYQL
TDEDTGEKFIVWGGAEDDSSNSPIPSNEVLSWKPLPSPNNNNNNDSTINQASNRGSTGNF
GRLKFRRMRDLVRKSYTKNKERDVIEHDEHNVRNTSSQSSTSSYGEPDQLKEKQKLSARA
LAKIQQLESRKNSPKTIRMEDEGYNGEFDAESARLVDSGSKASASSLRGWDGGQSIHHRS
MGEEISRGRQNLDDRNNFFSRKSFQDMGCSDYMIEALRNQHFVRPSHIQSMTFEPIMAGK
SCIISDQSGSGKTLAYLLPLIQRLRQEELQGLSKPSPQSPRVVILAPTAELASQVLNTCR
SFSKSGVPFRSMVVTGGFRQRTQLENLRQELDVLIATPGRFMFLIREGYLQLTNLKCAVL
DEVDILFNDEDFETAFQCLINSSPIITQYLFVTATLPMDIYNKLIESFPDCELVTGPGMH
RTSPGLEEVLVDCSGDETAEKSPDTAFLNKKNALLQLVERSPVPKTIVFCNKIDSCRKVE
NALKRFDRKGFAIKILPFHAALDQESRLANMKEFRSSKVEDVSLFLVCTDRASRGIDFEG
VDHVVLFDYPRDPSEYVRRVGRTARGAGGKGKAFIFVVGKQVSLARRVMERNSKGHPLHD
VPSILT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgcaccaagaccaccatccctgacagtgggatgtttcaagttccaaaagcca
tctgcgaatgttaatcttgtacagagaaacgttggaagcagtaattgcaaaagggttgtg
gttgcagccaaagctacatactctcgtgtgcctttggacactccgggggcttaccagctc
acagatgaagacactggagagaaatttattgtttggggaggtgctgaagatgactcttct
aactctcctatcccttccaacgaagttctctcttggaaacctctcccttctcccaacaac
aacaacaacaacgacagcactatcaatcaagcttctaataggggatcaacagggaacttt
ggcagactgaaatttcgaagaatgagagatctagttagaaaaagctacacaaaaaacaaa
gaacgtgatgttattgaacacgatgaacacaatgttagaaatacctcttctcaatcatca
acaagttcatatggtgaacctgatcagttaaaagagaaacaaaagctcagtgctcgagct
cttgccaaaattcaacagctagaatccagaaaaaattccccaaaaacaatcagaatggaa
gatgaaggctataatggtgaatttgatgcagaatctgctcgattagttgattctggatca
aaagcttctgcttcttccttgcgtggatgggacggagggcaatcaattcatcacagatct
atgggggaagaaatttccagaggaaggcaaaacttggatgatcggaacaatttctttagt
agaaaatcctttcaggatatgggatgcagtgactatatgatagaagccttaaggaatcag
cattttgtgcgcccttcacatattcagtctatgacatttgaacccatcatggctggaaag
agctgcataatatctgatcaaagtggatctggaaagactttggcttatctactaccactt
attcaacgtcttaggcaagaagaacttcaaggacttagcaaaccgtcacctcaaagtcct
cgtgttgtaatattggcaccaacagctgaattggcttctcaggttttaaatacttgccgt
tcattctcaaaatctggtgttccattccgttctatggttgttactggtggttttcgccag
agaacccaactggagaacctaagacaggagttagacgttcttattgcaactcctggtcgg
tttatgtttcttatcagagagggttacttgcagttaactaacctcaagtgtgctgtgctg
gatgaggttgacatcctctttaatgatgaggattttgagactgcatttcaatgcttgatt
aattcgtcacctatcatcacacaatatctatttgtgactgctactttgcccatggacata
tacaacaagttgatagaaagttttcctgattgcgaactagtgactggtcctggtatgcac
cgtacaagccctggcttggaagaggtccttgtagattgcagtggagatgaaacagctgaa
aaaagtccggacacagcttttctcaacaaaaagaatgcgctacttcagctggtggaacgt
agcccagttccaaaaacaattgtcttctgtaacaagattgatagctgcagaaaagttgag
aacgcattgaagcgctttgataggaaaggattcgcgataaaaattttaccgttccatgct
gcactggaccaagaaagcagacttgcgaacatgaaggagtttcgtagctcaaaggtggag
gacgtttctttgttcttggtgtgtactgatagagcatcccgaggtattgactttgaaggt
gtagaccatgtagtcctctttgattatccccgagaccctagtgaatatgtacgtcgtgtt
ggcagaactgccaggggtgctggaggaaaaggaaaggcattcatatttgtcgttgggaag
caagtttctcttgctcgaagggttatggaaagaaacagtaaaggccatccactccatgac
gtgccatcaatattgacttag
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