Solanum verrucosum: 125840802
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Entry
125840802 CDS
T11474
Name
(RefSeq) uncharacterized protein LOC125840802
KO
K06100
symplekin
Organism
sver Solanum verrucosum
Pathway
sver03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125840802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sver03021
]
125840802
03019 Messenger RNA biogenesis [BR:
sver03019
]
125840802
Transcription machinery [BR:
sver03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125840802
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125840802
U7-dependent histone pre-mRNA processing factors
125840802
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
LamB_YcsF
Motif
Other DBs
NCBI-GeneID:
125840802
NCBI-ProteinID:
XP_049375730
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MAGPIREQALPLLASANNHGDLAVKLSSLKQLKDVLLSAEPSQVAELLSYLIDLQSSPES
LLRKCLIEVIEAVGMKAKEHLLVLMPVLFACLKDMNSMVAKQSIISGMKIFCGVLEELSS
QFQRHGIVERWLEELWTWMVKFKDAVFGVIFEAVPIGTKLLVLKFLETYILLFTSSDSEK
SGAQAKHGWTFNISWVVGHHPVLDPASLASDAKNNVGTLLDLLHSASSLPGLLTISIINS
LAVIARRRPIHYNRILSALLDFDPNFEMTKGGHAASIQYSLRTAFLGFLRCTHPSILESR
ERLMKSLRAMNAGDAADQVLRQLDKMIRNNERASRDSKLNKDEQLPNHLPISGDPTKKRS
TPLDNEDPSNNYDLTTKRVHYGPNNHNHTSPVERNDSGKEYVNGVDPTVAQIINMIGALL
AEGERGAKSLDILISELPPDVLADIVITNMKHLPKNNPPPFAPVGTFSLARASDSTNLSQ
IMAPIDSSLGQQSWVPGSQTPISLSTATSSSFPEMPTSASLPLDSKRDPRRDPRRLDPRR
TAVAVEVSPPFVAEYNTSAMQSAILLSNINPSSSSNIDIAVPLMSSSECMPMAYLKMETN
SITGESSPGRVVSLSAPKEEDHEEDLNEAIPDRKSDPTTHVPLLSPGKVEPESVPEIPSE
VGVTNEIYSLLLETDQLSPPISTPATPEDACEDLPALPPFIELTYEQQRNMGALAVEQII
DSYKKLKETDSKHTGMALLSRLVAQIGADADAHVVLMIQKHIFSGNQHEKVHELAMHVLY
HLHYLMLSGSAENISSAAALYEKFLLSAAKSLLDSLPANDKSFSRLLGEVPYLPESVMRL
LVDLCSDNYLGNDGRDGDRVTQGLGAVWSLILGRPPNRQACMDIALKCAIHPQDEVRAKA
IRLVSNKLYVVGDISDNIEQYAKNMFLSAVDQHVTDAEYSQSGTLVQRTGETGNQEASVS
GSQISGPGFFENDFVKTAASDSQSDSELSLAQAQRLISLFFALCTKKFSLLHLVFDTYAR
APKAVKQAVHRHMPVLIRAIGSSCSELLHIISDPPQGCENLLTQVLHILSEGTTPPPDLV
AVVKRLYETKLKDATILIPVLSSYSKSEVLPIFPSLVALPLDKFQLALARILQGSAHTGP
ALTPAEVLVAIHDINPDRDGLPLKKITDACSACFEQRTVFTQQVLAKALRQMVDQTPLPL
LFMRTVIQAIDAFPTLVDFVMEILSKLVVRQVWRMPKLWVGFLKCVSQTQPHSFPVLLQL
PPPQLESALNKYVNLRSPLVTFANQPNIKTSLPRSTLVQLGLFNEPSLQQSHLSSTVHAS
ETGASVHGTTLT
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggctgggccgattcgggagcaagctctaccgctactcgcgtccgctaacaaccacggt
gatttggcagtaaaactatcttcgttgaagcaactgaaagatgtattgttatcggcagag
ccatcacaagttgccgagcttctctcttatttaattgaccttcagtcttcgcctgaaagt
ctcttacgcaaatgcctcattgaggtaattgaggcggttgggatgaaagcaaaggaacat
ttgttggtattaatgcccgtattatttgcatgcttaaaagatatgaattctatggtggca
aagcaatcaattatatctggcatgaaaatcttttgtggcgtattggaggaattatcatct
cagtttcagcggcacggtatagttgaaaggtggcttgaagagctctggacatggatggtc
aaattcaaggatgctgtctttggcgttatttttgaggcagtccctattggtacaaaattg
ctggtgttgaagttccttgaaacatatattctacttttcacatcaagtgattcagaaaaa
tctggagcacaagctaaacatggatggacttttaatatttcatgggtagttggtcatcac
cctgttcttgatccagcttcacttgcatcggatgcaaaaaataatgttggcactctattg
gatttattgcactcagctagttctctccctggtttactaaccatatccatcattaatagt
ttggcagttatagcaaggaggcgacctatccattataaccgcattttatcagcattgctt
gattttgatccaaactttgagatgacaaagggtggacatgctgccagcattcagtattct
ctgagaactgcctttctaggattcctgaggtgtacacatccttccattttggagtcaaga
gaaagattgatgaaatcgttgcgagcaatgaatgctggtgatgctgctgatcaagttctt
cggcaactcgataaaatgatcagaaacaatgagcgagcttcacgtgattctaaattgaat
aaagatgagcagttaccaaatcacttgcccatttcaggtgatccaaccaagaagaggtcg
actccgttagataatgaagatccatctaataactatgatctaactacaaaaagggttcat
tatggcccaaataatcacaatcacacttctccagttgagagaaatgattctgggaaagaa
tatgtcaacggggtggacccaacggttgcacaaataattaacatgattggtgctcttcta
gcagaaggagaaaggggtgccaagtctcttgatatcctaatatctgagcttcctcctgat
gtattggctgatatagtcataactaatatgaagcacttgcctaaaaacaatccccctcct
tttgcaccggttggaaccttttcattagctcgggcaagtgattctactaatctatcccaa
attatggcaccaattgattcctcattaggccaacagtcttgggttcctggatcccagaca
cccatctctttatcaactgccacaagcagttcatttccagaaatgcctacttctgcaagt
ctccctttagattcaaaacgtgatcccagaagggatccacggcgccttgacccaaggcgt
acagctgtggctgttgaagtatcaccaccgtttgttgcagaatataatacaagtgctatg
caatctgcaattctgctatctaacataaatccttccagttcatctaatattgatattgca
gtacccttgatgtcaagttctgaatgtatgccaatggcttatctgaagatggaaactaac
tctatcactggtgaaagttcaccaggacgagtagtcagtctgtcagctcccaaagaggaa
gatcatgaggaagacctgaatgaagctattcctgatcgcaagtcggatcccacaacacat
gttccactattatctcctggcaaagtggaaccggaatcggtgccagaaattccatctgaa
gttggagtaactaatgaaatttactctcttttgttagaaacagatcaactttctccccct
atttcaactcctgcaactcctgaagatgcatgtgaggacttgcctgcacttccaccattc
attgagctgacttatgagcagcaaagaaatatgggagcactggctgttgaacagataatt
gactcatacaaaaaattaaaagagacagacagtaagcatacaggaatggcattactttct
cggttggttgcgcagattggtgctgatgctgatgctcatgtagttctgatgatccaaaag
catattttctcaggcaaccaacatgagaaggtacatgagcttgcaatgcatgtgctttat
catttgcattatctcatgctatcgggttcggctgaaaacatttcatctgctgctgctcta
tatgagaaattcctcctcagtgcggcaaaatcattgctggattctctaccagcaaacgac
aagtcatttagtaggctccttggtgaagttccatatctgcctgaatctgtgatgagactg
ctagttgatttatgctctgacaattatcttgggaacgatggtcgtgatggtgaccgtgtt
actcagggccttggtgcagtttggagtttaattttggggcgcccccctaatcgtcaagca
tgcatggatatagctttgaagtgtgctattcaccctcaggacgaggtccgagcaaaagct
attcgcctggtgtcaaacaaactttacgtggttggtgacatttcagataatatcgagcag
tatgctaagaatatgttcttgtcagctgtagaccagcatgtcacagatgcagaatattcc
cagtctggaactttggttcagagaacaggagagacaggaaatcaggaagcctcagttagt
ggttctcagatttcagggccaggattctttgaaaatgattttgttaagactgcagcatct
gattctcaaagtgattcagagttgtctttagctcaagctcagcggcttatctcattattt
tttgctctatgcactaagaaattcagtcttctccaccttgtatttgatacctatgcacgt
gctcctaaggcagttaagcaggctgttcaccgtcatatgcctgttcttattagggctata
ggctcttcatgttctgaactgcttcatataatatctgatccacctcaaggctgtgaaaat
cttttgacacaggtgcttcatattctctctgaagggacaactcctccgcctgacttagtt
gcagttgtcaagcggttatatgaaactaaactgaaggatgcaactattcttattccagtg
ctctcttcatattctaagagtgaggttctacctattttcccaagtcttgttgctctccca
ctggataagtttcagcttgccctggctcggatattacagggttctgcccatactggtcca
gcactgaccccagcagaagtgctggtcgcaatacatgatataaatcctgacagggatggc
cttccgctaaaaaagataacagatgcttgctcagcttgtttcgagcagcggactgttttc
acgcaacaggtcctggcgaaagcgttgagacaaatggttgatcagactcctctcccgctg
ctcttcatgaggacagtgattcaggccattgacgctttccctactctggttgattttgtg
atggagatactctccaaacttgtggttagacaggtatggaggatgccaaaattgtgggtg
ggattcctaaaatgtgtctcacaaacgcaaccacattcctttcctgtactactacagttg
ccaccaccgcagcttgagagtgctctaaacaaatatgttaatctccgaagtccattggtt
acctttgctaatcagccaaatattaaaacttcactccctagatcaaccttggtacaactt
ggtctttttaatgaaccgagtttgcagcaatcacatctctcatctactgtgcatgcctca
gagactggtgcttctgttcatggaacaactctaacatga
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