Solanum verrucosum: 125840881
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Entry
125840881 CDS
T11474
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sver Solanum verrucosum
Pathway
sver03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125840881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sver03021
]
125840881
03019 Messenger RNA biogenesis [BR:
sver03019
]
125840881
Transcription machinery [BR:
sver03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125840881
Messenger RNA biogenesis [BR:
sver03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125840881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
125840881
NCBI-ProteinID:
XP_049375813
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MDEGEGGLNFDFEGGLDTGPTHPTASVPVIQSFDHTAAAAPSANINPPTVSAAVGGQSDV
GFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKH
TIEDIKECNMYKLGFCPNGPDCRYRHAKMPGPPPPVEEILQKIQHLASYNYGYSNRFNQN
RNANYSTQTDKSQASQAQNGMSLAVKSTATETPIIQQHQPHQQVQPPQLQGGPTQAQIHP
NGQQNQADRTAVVLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVEN
VILIFSVNRTRHFQGCGKMTSRIGGAANGGNWKHEHGTAHYGRNFSVKWLKLCELSFQKT
HHLRNPYNENLPVKISRDCQELEPSVGGQLASLLYLEPDSELMAISLAAESKRQEEKAKG
VNPDNGKDNPDIVPFEDNEEEEEEEEESEDEDESFDQGFGPAALGRGRGRGIAWPPIMPF
GHGPRPPPGMRGFPPGMMGDGFSYGAMTPEGFPMPDHFGMGPRPFGPYGPPFSSDLMFHG
HPPAGGFGMMMGPGRPPFMGGMGPGATGPPRAGRAVGMHPSFVPPSSQPSQYPYRAKREQ
QAPVSDRNDRFSSDQGKGQEMMGSVGGPDGVHMQIGKSEHNNQFGAGNSQKNEESESEDE
APRRSRHGDGKKKRRDVDEDAATGSEK
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagaagggggtttgaattttgattttgagggtggcttagacactgggcca
acacacccaactgcatctgttccagtaatacagtctttcgatcacactgcagcagccgct
ccgagtgctaatattaacccgcctactgtctcggcagctgttggcggccaaagcgatgta
ggatttgttggaaatcgtcggagtttcaggcagactgtttgccgccactggctgcggtca
ctgtgtatgaagggtgatgcctgcggcttccttcaccagtatgataaatcacgaatgccc
atttgtcgcttctttcgactctatggtgagtgccgtgaacaggactgtgtttataagcac
acgattgaggatatcaaggaatgcaacatgtacaaattggggttttgtccaaatggtcct
gattgtcgatatagacatgcaaagatgcctgggcctccacctccagtggaagaaatcctt
cagaaaattcagcatctggcatcctacaactatggttactcaaacaggtttaatcaaaat
cgaaatgctaattattcaacccagacagacaaatctcaggcttcacaagcacagaatgga
atgagtcttgctgttaaatctacagcaactgagacacccattatacaacagcaccagccg
catcaacaagttcaaccacctcaactacaggggggcccaactcaagcacaaattcatccc
aatggccagcaaaatcaagctgatagaactgcagtagtcctgcctcaaggaacttctagg
tactttatagttaaaagctgcaaccgtgagaatcttgaattgtcagtacaacaaggagtt
tgggcaactcaaagaagcaatgaggctaaactaaatgaagcttttgactctgtggaaaat
gtcattctgatattttcagtcaaccggaccagacattttcagggttgtggaaagatgaca
tctagaattggtggcgctgctaatggaggaaactggaagcatgaacatggaactgcccat
tatggacgtaatttttcagtgaaatggttgaagctctgtgaactgtccttccagaaaact
caccatttgaggaatccatacaatgagaacttaccagtgaagataagcagagattgtcaa
gaattagagccctctgttggtgggcagttggcttctttgctatatcttgaaccagatagc
gaacttatggcaatctcacttgcagcagaatccaagcgacaggaagaaaaggcaaaggga
gtgaaccctgacaatgggaaagataacccagatattgtaccatttgaagacaacgaagaa
gaagaagaggaagaggaagaaagtgaggacgaggatgaaagctttgatcaaggttttgga
ccagctgcgcttggtagaggaaggggcaggggaattgcatggcctccaattatgcctttt
ggacatgggcccaggcctcctcctgggatgcgaggcttccctccaggcatgatgggtgat
gggttttcttatggagctatgacacctgagggtttcccaatgcctgatcattttggaatg
ggtccccgaccttttggtccatatggcccaccattttcaagtgatttgatgtttcatggc
caccctccagctggtggatttgggatgatgatgggtcctggaaggccccctttcatgggc
ggaatgggtccaggagcgacaggcccacccagagctggccgagcagttggaatgcatcca
tcattcgttccaccctcatctcagccttctcaatatccttatagggctaaaagagaacag
caggctccagttagtgacaggaatgatagatttagctcagatcaaggtaagggtcaggaa
atgatgggttcagttggtggaccagatggagtacatatgcaaatagggaaatctgaacac
aataaccagtttggtgctggaaacagccaaaaaaatgaggaaagcgaaagtgaggatgaa
gcaccaagaagatcaagacatggggatggaaagaagaagaggcgggatgttgatgaagat
gctgcaactggctcagaaaaatag
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