Solanum verrucosum: 125840980
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Entry
125840980 CDS
T11474
Name
(RefSeq) uncharacterized protein LOC125840980
KO
K12830
splicing factor 3B subunit 3
Organism
sver Solanum verrucosum
Pathway
sver03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sver00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125840980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sver03021
]
125840980
03041 Spliceosome [BR:
sver03041
]
125840980
03036 Chromosome and associated proteins [BR:
sver03036
]
125840980
Transcription machinery [BR:
sver03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125840980
Spliceosome [BR:
sver03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
125840980
Complex B
125840980
Complex C
U2 SnRNP specific factors
125840980
Chromosome and associated proteins [BR:
sver03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
125840980
TFTC complex
125840980
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
125840980
NCBI-ProteinID:
XP_049375927
LinkDB
All DBs
Position
Unknown
AA seq
1393 aa
AA seq
DB search
MAVSEEESSSSSSAGSSKSRSYASRGASYLAKTVLRGSVVLQVVYGRIRSPTSYDVVFGK
ETSIELVIIDEDGVVQSICEQPVFGIIKDIAVLPWNEKFRVGSPQLLGRDLLVVISDSGK
LSVLRFCNEMHRFFAVTHVQLSSPGNPTDQIGRMLAVDSNGCFIAASAYEDSLVLFSRSA
SAGSDIFDKRIFCPTDKQGKIETANGFTSICGTIWSMCFIAKDVQPNKNYNPILAILLNR
RRSYRSEIMLIEWNTKEHSLYVVYQYSELGPLAHHIVDIPHSYGLVLVLRAGDAIVMDFK
VPHSPCFVYRISLNFTPPSVEEQNFVRETIRIPDIIDEEGMYSVAASALLELSDLNKNDP
MNIDDDSNVKPGSNFACSWSWNPGNENSPRMIFCADSGELFLIEFLFDSDGLKVSLSDCL
YKTLPAKALLWVRGGFLAVIVEMGDGMVLKVEDGRLVYRSPIQNIAPILDMSVVDYHDEK
HDQMFACCGMAPEGSLRVIRSGISVEKLLKTSPIYQGITGTWTVKMKLADSYHSFLVLSF
VEETRVLSVGVSFSDVTDFMGFQPDVCTLACGLVGDGLLVQIHQTAVRLCVPIAAAHPDG
IDSASPTFTSWSPDNMTISLGAVGPNLIVVATSSPCYLFILGIRTISVHHYEIYQMQHVK
LQDELSCISIPQRRLEQTSFISRTSNTNGVPLDSLPVGLDISNIFVIGTHKPSVEVLSFT
SDKGLSVLAVGSITLTNTLGTTVSGCIPQDVRLVLVDRLYVLSGLRNGMLLRFEWPSISA
VSSLVSPGLQTFDNSCMVNCTSSSIFASQNFRTQPTQVTSLLDKTKDFPVYLQLVAVRRI
GITPVFLIPLYDSLDADVIALSDRPWLLQTARHSLSYTSISFPPSTHVTPVCSTECPKGI
IFVAENSLHLVEMVPSKRLNVQKFHFGGTPRKVLYHSDSRLLLVLRTDLSDDLCSSDVCC
IDPLSGSVLSSFKFEPGEIGKCMDLVKAGNEQVLVVGTGLSSGPAIMPSGEAESTKGRLI
VLCLEQMQNSDSGSIAFSSRAGSSSQRTSPFREIGGYAAEQLSSSSLCSSPDDNSCDGIK
LEESEAWHLRLGYSTTWPGMVLAVCPYLDRFFLASAANCFYVCGFPNDNAQRVRRLAVGR
TRFMIMTLTAHFTRIAVGDCRDGILFYSYQEDARKLDQVYCDPVQRLVSDCTLMDGDTAA
VSDRKGSLAILSCLNHLEDNFNSPERNLALTCSFYMGEIAIRIRKGSFSYKLPADDALRG
CQAASNVGDISQNSIMASTLLGSIIIFIPLTREEYDLLEAVQARLVIHPLTAPILGNDHT
EYRCRGSTARAPKALDGDMLAQFLELTSMQQEAVLALPLGAQNTIMFNSKQSPDPITVNQ
VVRLLERIHYALN
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttccgaggaagaatcgtcgtcttcatcctctgccggtagcagcaagtcccga
tcatatgcttctcgtggtgctagttatttggctaagactgttcttagaggaagtgttgtt
cttcaagtggtttatggtcgtatacgctctccaacttcatacgatgtcgtttttggcaag
gaaacatctatagaattggtgattatagatgaagatggagttgtgcaatctatttgtgag
cagcctgtatttggcataataaaagatatagctgtccttccctggaatgagaagtttcgt
gttggaagcccacagcttctgggcagggatctcttggttgttatttcagattcagggaag
ctgtcagttctcagattttgcaatgaaatgcacaggtttttcgctgtaacacatgttcaa
ctttcgtctcctggaaatcctacggatcaaattggaagaatgttagccgttgattccaat
ggttgttttattgcagctagtgcatatgaagacagtttggtgcttttctcccgctctgct
tcagctggcagtgatatatttgataagagaatcttttgtcccactgacaagcaagggaag
atcgagactgcgaatggttttaccagtatctgtggtaccatatggagtatgtgctttatc
gcaaaagatgttcaaccaaataagaattacaatcctatattggccattcttctcaatagg
aggagatcatataggagcgagatcatgttgattgagtggaatacgaaggagcattcgctc
tatgtagtatatcagtattctgaacttggaccactagcacatcatatcgtagatattcct
cattcttatggactcgtgttagtacttcgtgctggggatgctatagtgatggactttaaa
gttcctcatagcccttgttttgtttatcgaataagtttaaattttacccctccttcagtt
gaggagcagaattttgtacgagagactattagaattccagatattatagacgaagaaggt
atgtatagtgttgcagcatctgcattgcttgagctcagcgatttgaataaaaatgaccca
atgaatatcgatgatgatagcaatgtgaagccaggttcgaatttcgcgtgctcatggagt
tggaatcctggaaatgagaacagtcctagaatgatattttgtgcagactctggagagctt
ttcttgattgaatttttatttgattctgatggcctgaaagtatctctgtctgattgtctt
tacaagactctaccagccaaggcacttttgtgggtgagaggtggatttttggcagttatt
gttgagatgggtgatgggatggtgctaaaagttgaagatggaagacttgtttatagaagt
ccaatccaaaatatcgcaccaatattggatatgtcggttgtggattaccatgatgagaaa
catgatcaaatgtttgcctgctgtgggatggcacctgaaggatctttacgagttatacgt
agtggcatcagtgtagagaaattgttgaaaacttctcccatttatcagggtattactgga
acttggacagttaaaatgaaacttgctgattcttatcattctttccttgtactgtccttt
gttgaagagacgagggtgctatctgttggtgtgagcttttctgatgtaaccgacttcatg
ggtttccaacctgatgtttgcacgttggcatgtggtcttgtgggtgatggtctgctggtg
caaatccaccagactgctgtgagactgtgtgtacctattgctgctgcacatccagatggt
attgattcggcatcaccaactttcacgtcgtggtcccctgataatatgacaataagcctg
ggagctgttgggcctaatttgattgttgttgcaacttccagtccatgttacctattcatt
cttggcatcaggacaatatcagtccatcattatgaaatataccagatgcaacatgtgaaa
ttgcaagatgaactttcctgcatctcaatcccccaaagacggcttgagcaaacatctttt
atctctagaactagtaatacaaatggagttcctctggattctcttccggtcggattggac
atcagtaacatcttcgttattggtacacataagccttctgtagaagttctatcatttact
tctgataagggtctgagtgttcttgctgtagggtctataaccttaacaaacactcttgga
acaactgtaagtgggtgcatccctcaagacgtaagacttgtactcgtcgatcggctttat
gttctttcaggattgaggaatggtatgctactcagatttgagtggccttctatctcggca
gtttcctcactagtctcacctggccttcagacttttgacaattcttgtatggttaattgc
acaagttcctcaatttttgcatctcagaattttagaactcaacctacacaagtgaccagt
ttattggataagacgaaggattttcctgtttatctgcagttagttgcagttcgtcggatt
ggcatcactcctgtttttttgattccattatatgattctcttgatgctgatgtgatcgct
ctaagtgataggccctggctattgcaaactgcaaggcatagcctctcgtatacttcaata
tcttttccaccttccacacatgttactccagtttgttcaactgaatgtcccaagggaatt
atctttgttgctgaaaacagtcttcatttggtggaaatggtgcctagtaaacggcttaat
gtgcagaaatttcattttggcggtactcctcgaaaggttctatatcatagtgacagcagg
ttgttgcttgtattaaggactgatctcagtgatgatttatgttcatctgatgtctgctgc
atagatcctctcagtggatcagtgttgtcatcctttaagtttgagcctggggagatagga
aaatgcatggacttggtaaaagccggaaatgaacaagttcttgttgttggaactggtctc
tcttctggtccagctataatgcctagtggtgaagctgaaagtacaaagggccgtctaata
gttctttgcctcgagcaaatgcaaaactcagatagtggatcaattgcattttcttcgagg
gctggatcatcttctcaacggacttcacctttccgtgagattggtggatatgccgccgaa
cagctgtctagcagtagtctctgtagcagtcctgatgataacagctgtgacgggattaag
cttgaggaaagtgaagcatggcacttaagattaggttattcaaccacttggcctggaatg
gtgcttgcagtctgcccttatcttgatcgttttttcttggcctctgcggctaattgtttc
tatgtttgtggttttccaaatgataatgcccaaagagtcagacgcttagcagtagggaga
acacggttcatgatcatgactcttactgcacacttcactagaattgctgttggtgattgt
cgtgatggcatcctcttctactcgtatcaagaggatgcaagaaaactagatcaagtttac
tgtgaccctgtccagaggttagtttctgattgcactcttatggatggagacacagctgcc
gtttcagatcggaaggggagtttagccattttatcatgtctgaatcacttggaagataat
ttcaacagtccagaacgcaatctagctctaacttgttcattctacatgggcgagatagct
ataagaattcgaaaggggtcattctcctataaacttccagcagatgatgcacttaggggc
tgtcaagctgccagcaatgtcggtgacatatcacaaaatagtatcatggctagtacgctt
ttagggagcataattatttttattcctcttactagggaggaatatgatctcttagaagca
gtacaggctaggcttgtcatccatccgctgaccgctcctattttgggaaatgaccatact
gaataccgttgtcgtgggagtacggctagggcacctaaagctctggatggtgatatgctt
gctcagttcttggagcttactagtatgcaacaagaagctgtattagcattgcctcttggc
gcacaaaacacaattatgttcaattcaaagcaatctcctgatccaattactgtcaatcag
gttgtgcgactgctagaacgcattcattatgccctgaactga
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integrated database retrieval system
