KEGG   Sturnus vulgaris (common starling): 106850826
Entry
106850826         CDS       T08833                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
svg  Sturnus vulgaris (common starling)
Pathway
svg03250  Viral life cycle - HIV-1
svg04144  Endocytosis
svg04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:svg00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    106850826 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    106850826 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    106850826 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:svg04131]
    106850826 (VPS4B)
   03400 DNA repair and recombination proteins [BR:svg03400]
    106850826 (VPS4B)
Membrane trafficking [BR:svg04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    106850826 (VPS4B)
DNA repair and recombination proteins [BR:svg03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    106850826 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 RuvB_N AAA_5 AAA_22 IstB_IS21 AAA_25 AAA_18 DUF815 AAA_2 AAA_33 AAA_17 nSTAND3 RNA_helicase USP8_dimer AAA_24 PhoH ResIII AAA_7 Mg_chelatase NACHT Parvo_NS1 AAA_28 bpMoxR DUF5906 Viral_helicase1 Dzip-like_N
Other DBs
NCBI-GeneID: 106850826
NCBI-ProteinID: XP_014727917
LinkDB
Position
Unknown
AA seq 452 aa
MVSDRGKGSCTATNYLFVLQKAIDLASKAAQEDKAGNYEEAFRLYQHAVQYFLHVVKYEA
QGDKAKQSIRAKCTEYLDRAEKLKEYLKKREKTAPKPVKESGPAEGKGNDSDGEGESEDP
EKKKLQNQLQGAIVMERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGIL
LFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSII
FIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNEGILVLGATNIPWVLDSAIRRR
FEKRIYIPLPEDHARAAMFKLHLGSTPNELKESDYRELGKRTEGYSGADISIIVRDALMQ
PVRKVQSATHFKKVKGPSVSNPNTMVDLFTPCSPGDADAIEMTWMEVPGDKLLEPKVSMT
DMLRSLASTKPTVNEQDLEKLRKFTEDFGQEG
NT seq 1359 nt   +upstreamnt  +downstreamnt
atggtctctgatcgtggaaaaggctcttgcacagcaactaattatttgtttgtgttacag
aaagcaatagaccttgctagcaaggcagcacaagaagataaagcaggaaactatgaggaa
gccttccgcttgtaccaacatgctgtgcagtattttctccatgttgttaaatatgaagca
cagggtgataaagcaaaacaaagcattagagcaaaatgtacagaatacttggaccgagca
gaaaagctgaaagaatatctgaaaaagagagaaaaaactgcaccaaaaccagttaaagaa
tctggtcctgctgaaggaaaaggcaatgacagtgatggagaaggggaatcagaggaccct
gaaaaaaagaagctacagaatcaacttcagggagcaattgttatggagcgaccaaatgtc
aaatggagtgatgttgctggccttgaaggtgccaaagaggcacttaaagaagcagtcatc
cttcccattaaatttccacacctgtttacaggcaagagaacaccctggagaggcattctc
ctgtttggaccaccaggaacaggaaagtcttatttagcaaaagctgtggcgacagaagca
aacaactccaccttcttctcagtatcttcgtctgaccttgtctcaaaatggctaggtgaa
agtgaaaaattagtgaaaaacttgttccagcttgccagagaaaacaaaccttctatcatc
ttcattgatgagatagattccctctgcgggtcaagaagtgaaaatgaaagcgaggctgct
agacggataaaaacagagtttctagtccagatgcaaggggttggtgttgacaatgaagga
atcttggtcttaggagcaacaaacataccctgggttttggattctgctatcaggagaagg
tttgagaagcgtatttatattcctttacctgaagaccatgccagggctgcaatgttcaaa
cttcaccttgggtcaactccaaatgagctaaaagagtcagattatcgagagcttgggaaa
agaactgagggctattctggtgcagatataagcatcattgtccgtgatgcactgatgcag
cctgttagaaaagtgcaatcagcaactcactttaaaaaagtaaaaggaccatcagtgtct
aatccaaataccatggtagatttattcaccccttgctctccaggtgatgctgatgcaata
gaaatgacatggatggaggtcccaggtgataaattactggagcctaaagtttccatgacg
gatatgctcaggtcgcttgctagcacaaaaccaacagttaatgagcaggacctggagaag
ctgaggaagtttacagaagactttggtcaggaaggctaa

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