Sturnus vulgaris (common starling): 106851359
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Entry
106851359 CDS
T08833
Symbol
SETX
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
svg
Sturnus vulgaris (common starling)
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
svg03021
]
106851359 (SETX)
Enzymes [BR:
svg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106851359 (SETX)
5.6.2.5 RNA 5'-3' helicase
106851359 (SETX)
Transcription machinery [BR:
svg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106851359 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
ResIII
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
106851359
NCBI-ProteinID:
XP_014728728
LinkDB
All DBs
Position
Unknown
AA seq
2727 aa
AA seq
DB search
MSTCRWCTQSGADTTEFLKHYAAQRLSQEDFEGSNDDLCYCLECVVEYHKAREECPRLHE
DLWHLETSRLIAHMEKSMHEETGEDELFLIDERGETPLSGFVGPNFENNLRVPLLEILKY
PYLLLHKKVSELCVEVLCRMELSHDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLGK
VDRDDYYDLEEVLTCLFKVIELGLFENPDIYSSSMVEKGKLILLPAHLYDTANYKNYWLG
ICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQL
GSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFRRTKSEPESDYGDDMISCSQIVYNY
NTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDLRVHHSTFLWFIPFVQSLM
DLKDLGVAYIVEVIHYLCSEIKDILIERFQQCDKISEFFLLILVSIVELHRSKKCLHLLW
ISSQEWVEAVVRCATLPSRAFTRCSEKAPGLCAKGSAVGSLQAPSSVQHACVQLIRSLLK
EGYQIGQHALCKQYLDKLNLLLRGNRAVGWQLSSQETQELQTCLKQVIRSIKGKALSTSL
AGGSSSNSTALPAISLKQDKNACDGGYKMSGHERRDLYSPFVTSKEDRDCQENPFHKRKN
AWEEECRDACRSSTSCTSTESLLMNIKKEPDDLAAQEFTFPQNSLAAKVCGKVQENRNSD
LVAGKCNTDDECFNSNTQHSDFRRSRELEMKHRAEPKTQPYLSAQTHVDSPSSRNCQSMQ
ETSGNGVFQSRLIPTKQVSKEDSSNSSRNEPGVQGKEDDSTLLLGRNDTSLKKVSTEEKS
GSSLMSFFKRNTTMQTSNQEQPNLNDLNKYDCKNQVSETFCRDNTSACGYFPFSSENKRD
MMRPLSVKRESSDRLFEFSEYFRRENSSVGKKEEDFVKTVSNDNALSDSQIDGELSKLSL
AAYAKSVNFPVESIQESSVCHNVSDIKRKVKGSVRSSNEGQSTKCPSGADGPSNQVIVIS
DSSDEEKGVADKEETKTKNENVCAEESSTSSSISDSDTKRESRPPGSPLLLDDCDSQYFE
FETEADVFSAWQDTQAYAVETTEECKQDDVSAAAETSNSDDCLNDNLNDWGYDLHYFSDD
SMEEAASPVEKQTEDTSHQKEADDTKEATNSTSEESVGKEDAKGQLEKCADKGTAKSFTL
DSKLPEPKASTSPISLASKLALKKNSTSLQKTTAKCKSATAVQRSPKKPPLVKTAKNKTP
FQSTAERSQPGRSMPAVVPPRKVRQSPAPASTVEKLGLKKGPRKAFDLSQPSLESLAQLR
SHGKAAGRIPVGQKRRTKQIEAQCLSVKRNKKLLACQDRQYLRQTRPKRSVKNSAGSSES
RNKVNKVSAKPVEQKPQSFELAAIKESVENQREKKREETDCPSASERKFESFSVEGVASA
SKMPHSSDWNRKWEGNSVVVPPVPMDSSLSSTALGDDKDESSGKGCTVLPECEMKTSEQN
GCKSDESSDEGDDNLFLTQLDPVDMELCSQEESVQDSAIGSKTPEEMDVDESLQQNEPSA
VVKCKDKDCMEQVEKPGEYCSKHPATSPGPDHVFAKPSLPPPKIPKPSTTKIFSSTSSSR
NAAFSKDLEDCRKLPPPSKSKVNAAKAVAARPPPLSKPAPAGNPVCRSPSFSNLPQPLST
NNVLQLQNRRYENASNISRGSGRDTYSSFLGAQQRNYSIFVNHVLEWTYDMFANFNFFGT
PDNLLQSIVASVPVHFEGYNEYFNTFFPLMMLNAFETLAQEWVENQKVREKSYCFYLENF
SADMNTAHFTAHLRESDLARQLHPKEDDLILLVVHKEKDTFGGESGMESHIVNHVGLVTR
FSRASGYANRQKEQQTACHLTVQTRGNLSFFVRKQVKCVVVGSLVTTHRTFKGLLLLNRS
PLARPIINPSYNDFCPRDLPVASGSAASYMNEYNEDQKRAIETAYAMVKQHPGLPKICLI
HGPPGTGKSKTIVGLLSRVLRENTRNDKTARKKNSKIKPNRFLVCAPSNAAVDELMKKII
VAFKEKCQNKQEPLGNCGDIKLVRLGAEKSINSEVRGFSLDKQVEHRMKRKPGDCDQDIQ
KKKEALDQKLDMLSRERAMHRCERGNFXSSLCFCSQMLNDEIGRLAKERQQLASQLKEVR
GHSQKVQADIILESDIICCTLSTSGGSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIP
LIHRCNKLVLVGDPKQLPPTVKSIKAQQYGYDQSLMARLQRHLEEQVQRNMLHSLPVVQL
TVQYRMHPDICLFPSNYVYGRTLKTAKSIEENRCSSEWPFQPYLIFDVADGREERDNDSY
SNPREVKLVMELIRTIKEKRKDLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSPGEVDTV
DAFQGREKDCIIVSCVRANSSEGSTLAYVQASSTKGSIGFLASLQRLNVTITRARFSLFI
LGRLQTLMEDKNWNHLIQDAQKRGAIIRTTEKNYKKEALRILKLRPSGQPPAKGGTMTSP
VVQAGSSSGKRSEPGNSGNSPRELAAGPGHAVPQGNRGPTQPAGTPAADSRRSSAPAPSG
AAALAVIPEKPRDPRLASLASRAEAKGKEQPLKDSHQSAQSNPGSTPQQGLDVSSAARDQ
ICRTENARKAQQTAGQSSVLPSAPLPAQHEGDWRAAVSKSSSRAPSEGGQSSSSEWNKDS
RGLSRRPSQDAPENTESGSAKRRKIFS
NT seq
8184 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgtgccgatggtgcacacagagtggtgctgacaccaccgagttcctgaagcac
tatgctgctcaaaggctatcccaggaagattttgaaggatccaatgatgacctctgttac
tgcctggagtgtgtggttgaatatcacaaagcaagggaagaatgtccaagattgcatgag
gacctgtggcacttggaaacctcccgcctcattgcccacatggagaaatccatgcacgaa
gaaacaggagaggatgagttgtttctgatcgatgagcgtggggagacgcctctgtctggt
tttgtgggcccaaattttgagaacaacctgcgagtgcctctgctggaaatactgaaatac
ccatatctgctgctgcataagaaagtcagtgagctgtgtgtagaagtgctctgtagaatg
gaactaagtcacgactcctttcaggtctttgaaaaatacccgggaatttatctctttttg
gtacacccaaatgaggtgattcgtcgatgggccatcctaacagcaaggaatttaggaaag
gttgacagggatgattactacgacctagaggaagtgctgacttgtttgttcaaagttatt
gagttggggctttttgagaatccagatatttacagctcttcaatggttgaaaaggggaaa
ctcatccttctgccagctcatttgtatgatacagccaactacaagaactattggctggga
atttgcatgttgctgtcagtgctggaagaacaagctatggactctttgttactgggccca
gacaaacaaaatgatttcatgcagtctatacttcacactatggagaaagaagcagctgat
gattccactgaccccttctggcctgccctgcattgtttcatggttattttggatcagctt
ggatctaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatcaac
agtgtgagctacaacaatgaaatcaaaaatattcgcagtagcttcaggaggacaaaatct
gaaccagagtcagactacggtgatgacatgatttcttgcagtcagattgtgtataattat
aacacagaaaagcctcaaaaggacactggctggaaggctgccatttgcccagagtactgc
cccaacatgtacgaagatatgcagaccctggctaacatgcttcagtctgacattggcaga
gacctgcgtgtccatcacagcacattcctctggttcatcccttttgttcagtcccttatg
gacctcaaggacttgggtgtagcctatatagtggaggtcatccactacctctgctcagaa
atcaaagacatcctcatcgaaagatttcagcagtgcgacaaaatctccgagttcttcctc
ctcatcttggtgtccattgttgagctacacagaagtaagaagtgcctgcatttgctgtgg
atcagctcccaggagtgggtggaggcagtggtgaggtgtgccacgctcccaagcagagcc
ttcactcggtgcagtgagaaggcaccggggctgtgtgccaagggctcggctgtgggctcc
ttgcaggcgcccagctcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaag
gagggctaccagatcggccagcacgccctgtgcaagcagtacctggacaaactcaacctc
ctcctgcggggaaatcgagctgtggggtggcagctgagcagccaggaaacccaggagctg
caaacgtgtttaaagcaagttataagaagtataaagggcaaagcactgagcacctctttg
gctggaggaagcagttcaaactcaacagctttgccagctatctctctaaagcaggacaag
aacgcatgtgatggtggatacaagatgagtggacatgagaggagggacctttattcaccc
tttgtcacgtcaaaggaagacagagattgtcaagagaaccctttccataagagaaagaat
gcctgggaagaggaatgtagagatgcatgtaggagttcaacatcttgcacatccacagaa
agcctcttgatgaatattaaaaaggaacctgatgacttggcagctcaggagtttacattc
ccacagaactctttggcagcaaaagtatgtgggaaagttcaggaaaataggaactctgat
cttgtggcaggaaaatgcaatacggatgatgagtgcttcaattcgaacacccagcattca
gatttcaggagaagcagagagttagaaatgaaacacagagcagaacccaaaacacaacca
tatctgtctgctcaaactcatgttgattctccatcttcaaggaattgccaaagtatgcaa
gagacaagtggaaacggtgtgttccagtccagactgatccccactaaacaagtctccaag
gaagattcctctaactcttctagaaatgaacctggtgtgcaggggaaggaagatgacagt
actttacttttagggcgtaatgacacctcactgaaaaaagtatcaacagaagaaaaatca
ggttcatcgttgatgtctttctttaagagaaacaccactatgcaaacttcaaaccaggag
cagcctaatttaaatgatctgaataaatatgactgcaaaaatcaagtttcagagacattt
tgtagggataacacttcagcgtgtggttattttccatttagctcagaaaacaagagggat
atgatgaggccactgtcagtgaagcgtgagtcaagtgacagattgtttgagttttctgaa
tatttcaggagggaaaacagttcagtggggaagaaagaggaggattttgtgaagacggtt
tccaatgataatgctttgtcggactcccagattgatggagagctcagtaaattatcttta
gctgcttatgccaaaagtgtcaattttcctgttgaatccatccaggaaagctcagtttgc
cacaatgtgtctgatattaaaaggaaagtgaaaggttctgtaagatcttccaacgagggc
caaagtaccaagtgtcccagtggagcagatggccctagcaatcaagtcattgtaatttca
gactcttctgatgaagaaaaaggcgtggctgacaaggaggaaacaaaaaccaagaatgaa
aatgtgtgtgcagaggaatcttcaacttccagcagcatttctgatagtgacactaaaaga
gaatcaaggcctccaggctctcccctgttactggatgactgtgattctcagtactttgag
tttgaaacagaagctgatgttttttcagcttggcaagatactcaagcgtatgctgtggaa
acaactgaggagtgtaaacaagatgacgtttcagcagcagcagagacgagtaattcagat
gactgcctgaatgataacttaaatgactggggctatgacctgcattactttagtgatgac
tccatggaagaagcagcaagcccagtagaaaagcagacagaagatacttctcatcagaaa
gaagctgatgatacaaaagaagcaactaattcaacctcagaagaatcagttggcaaggaa
gatgcaaaaggtcagctggagaaatgtgcagacaaaggtactgctaaaagcttcaccctg
gattcaaaattgcctgaacccaaagcatctacatctcccatctcattagcttcaaagttg
gcccttaagaaaaatagcacaagcctacagaagaccacagcaaaatgtaaatcagcaacg
gctgttcagagaagtcctaaaaaacctccccttgttaaaacagccaaaaataaaacacca
ttccaaagcacagcagaacgttctcagcctggcaggtcgatgcctgccgtggttcctcca
aggaaggttcggcagagtcctgctccagcatcaactgtggaaaagcttggcctgaagaag
ggtccccgcaaggcgttcgatttgtcccagccctccctggagagcctggctcagctgcgc
agccacggcaaagccgcaggcagaattccagttgggcagaaaaggagaaccaaacagatc
gaggctcagtgcttgtctgtaaaacgtaataaaaaactgctcgcctgccaagaccggcag
tatctacggcagacaaggcccaaaagaagtgtgaaaaattctgcaggaagttcagagagc
agaaacaaagttaacaaagtgtctgcaaagcctgtggaacaaaagcctcaaagttttgaa
ctggcagctattaaagaatctgttgaaaaccagagggagaaaaaaagagaagagactgat
tgtccttctgccagtgagagaaaatttgagagcttctctgtggagggggtggcaagtgcc
tctaaaatgcctcattcttcagactggaacagaaaatgggagggtaacagtgtggtggtt
cctcctgtccctatggattcgagtctctcttccactgcacttggagatgataaagatgag
tcttcaggaaaaggttgcactgtcctgcctgagtgtgagatgaaaacctcagagcaaaat
gggtgtaaatcagatgaaagcagtgacgaaggtgatgataatttgtttttaacccagtta
gatcctgtggatatggagttatgttctcaggaggaaagtgttcaagattctgctataggt
agtaagaccccagaggaaatggatgttgatgaaagccttcagcagaatgaaccctcagct
gttgtgaaatgtaaggacaaagactgtatggaacaggtggaaaagcctggagaatactgc
agtaaacacccagccaccagcccagggccagatcacgtgtttgccaagccttctctacca
ccacctaaaataccaaagccttccactaccaaaattttcagctcaacgagttcctcacgg
aacgcagccttcagcaaagatctcgaagactgcagaaagttgcccccaccttcaaaaagc
aaagtgaacgcggccaaagcagtggcagccaggccaccaccactttcaaaacctgcacca
gcaggaaatccagtgtgcagatctccaagtttcagtaatttacctcaaccccttagtacc
aataacgttctccagttacaaaatagacgctatgagaatgcttcaaatatttccagaggg
tctggccgagacacctactcctcttttcttggcgctcagcagcgcaattacagcattttt
gttaaccatgtcctggagtggacttacgacatgtttgcaaacttcaacttctttggaact
ccagataatcttctgcagtccatagtagcctctgttcctgtccattttgagggctacaac
gaatattttaatacattttttcccttgatgatgctcaacgcctttgaaacactggcacaa
gaatgggtagaaaaccagaaagtaagagagaaaagttattgcttctacttagagaacttt
tctgctgacatgaatacagcacattttacagctcatctacgagagagtgatttggcgaga
cagcttcatccgaaggaggatgacttaatccttttggtggtccacaaggagaaggacact
tttgggggagaaagtgggatggagagccacatagtgaatcacgttggcctcgtgacacga
ttttctcgtgcatctggctatgcaaacagacaaaaagagcagcaaactgcctgtcatctt
actgtgcagacccgaggcaatttgtcattctttgtccgtaagcaagtgaagtgtgtggtg
gttggctccctggtgaccacacacagaacgttcaaaggtctgctgctgctgaacaggagc
cccctggctagacccatcattaatccaagttacaatgacttctgtcccagagatctgcct
gttgcctcaggaagtgctgcttcatatatgaatgaatacaatgaggatcaaaagagagcc
attgagacagcttatgccatggtaaagcagcacccagggcttcccaagatctgccttatc
catggaccacctgggacaggcaaatcaaaaactattgtaggactcctgtcccgtgttttg
agagaaaacactaggaatgacaaaacagctcggaaaaaaaattccaagattaagccaaac
cgttttctagtttgtgcaccatcaaatgctgctgttgatgaactcatgaaaaagatcatc
gttgcttttaaggaaaaatgccaaaacaaacaggagcctttgggaaattgtggtgatatc
aaattagtgcgacttggtgctgaaaagtcaatcaacagtgaagtccgaggattcagcctg
gataagcaagttgaacacagaatgaaacggaagccaggtgactgtgaccaggacattcag
aagaagaaagaggctctggatcagaagctggacatgctctctcgagagcgtgccatgcac
agatgtgagagaggtaatttttaatcctctttgtgtttttgtagtcaaatgttaaatgat
gaaattggcagacttgcaaaggagagacaacagctcgcttctcagctgaaggaggttcgg
gggcactcccagaaagtgcaggcagacatcatcctggagtctgacatcatctgctgcacg
ctgagcaccagcggggggagcctgctggaatcggccttctcccggcaggggctcgatccc
ttcagctgtgtcatcgtggacgaggcagggcagtcgtgtgaggtggaaacgttgattcca
ctcatccatcgctgtaataaactcgtcctcgttggagatcccaaacagctccctcctact
gtcaaatcaataaaagctcagcagtatggctatgaccagtctttgatggcccgtctgcag
aggcacctggaggagcaagtgcagaggaacatgctgcacagcctgcctgtggtgcagctg
actgtgcagtacaggatgcacccagacatctgcctcttcccatccaactatgtttatggc
aggactctaaaaactgccaagtcaatagaggagaacagatgttcttcagagtggccattc
cagccctacctgatttttgatgttgccgatggtcgtgaggagcgagataatgactcttac
agcaatcctcgggaagtgaagctggtgatggagttaattagaacaattaaagaaaagagg
aaggatctgggccttcgtcgcattggaataattaccccttacagtgcacagaaaaagaaa
attcaggaacagctggacagtgtgtttaaaaataacagcccaggagaggtggacacggtg
gatgcgttccagggccgggagaaggattgcatcatcgtgtcctgtgtgcgggcaaacagc
tccgagggctccactctggcatatgtgcaggcaagcagcaccaaaggatccattgggttt
ctggcgagcctccagcgactgaatgtcaccatcacccgtgcccgcttcagcctcttcatc
ctgggccggctgcagacactcatggaagataaaaactggaatcacttgattcaagatgct
cagaaaagaggtgccattattaggacaacagaaaaaaattacaagaaagaggctctgagg
attttgaagctcaggccatcaggacaacccccagccaaaggagggacgatgacatctcct
gtggtgcaggctggttcttccagtggcaagaggagtgagcctggaaattctgggaacagc
ccacgggaacttgctgctggccctggccatgcagtgccccaaggaaaccgagggcccaca
cagcctgcagggaccccagctgcagattccaggaggagcagtgcccctgcaccctcaggg
gctgcagcacttgctgtcattccagagaaaccacgggacccaaggctggcaagcctggcc
agtcgagctgaagccaaaggcaaggagcagcccttgaaggacagccatcagtcagcccag
agcaacccaggatcaacaccacagcaaggcctggatgtgtcctcagctgccagggatcag
atttgcagaacagaaaatgctaggaaggcccagcaaacagcaggacagagcagtgtgctt
ccctcagcccctctcccagctcagcacgagggtgactggagagcagctgtgtccaaaagc
agctccagagcccccagtgaaggaggtcagagcagcagcagtgagtggaacaaagactct
cgtggtttatcaaggagaccatcccaggatgcaccagagaacacagaatcaggctcagcc
aagagaagaaagatcttttcctga
DBGET
integrated database retrieval system
