Sturnus vulgaris (common starling): 106851880
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Entry
106851880 CDS
T08833
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106851880 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svg03019
]
106851880 (PNLDC1)
Enzymes [BR:
svg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106851880 (PNLDC1)
Messenger RNA biogenesis [BR:
svg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106851880 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
106851880
NCBI-ProteinID:
XP_014729650
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MEFTGLHSTSLQNNEPSLFDSPAERYVKARQSVQRFTLVQLGLAIFSKENSNKYVVHSYN
FFLFPSTLGIRDVEFTFSASSIQFLSHYGFDFNKFLKDGIPYMNEVQEKILKQHLLAGTW
KVCSTSCADRDVLKKAIDEVTSWITAAKEEDTMILQDLNGYHMLEVQLVLRQALENVWTE
PLGDKKVMVKKVSPEQRQLLENSSYDHCQKKLILLSARGFTNLFQILVKAKKPLVGHNML
MDLMHLHDKFYRPLPESYEEFKRNIHNLFPVIIDTKTVTKSVQKKCLFPRVSSLLEVYAV
LCSSNLNPKDPPCPVIALASGCSRYAEKKSPHEAGYDAFLCGSVLLMSAHLLLCRSTDGA
VDTEPSFSQYLTVLAEHVNKVNFIRGGVSSINFSGEDAPCRHPPALVVHVRGWPVLTERQ
IYQEFKARCRFDVRRLSKNQFILLTNKHKHVRLVLRDYRHHPHLQVSVYRHWRHSPSVNC
LLQISGIVALWSLLAFALGGARSC
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactggtttgcattcaacttccctacaaaacaacgagcccagcctgtttgac
tcccctgcagagcgatatgtgaaggccaggcagagtgttcagcgtttcactcttgtccag
cttgggctggcaatattctcaaaagaaaattcaaacaagtatgtggtgcattcatacaac
ttttttctctttccctcaacactgggaataagggatgtcgaattcaccttctctgcatct
agtattcagttcctgtctcattatggctttgacttcaacaagttcctcaaagatggaatc
ccatacatgaatgaggtacaggagaagatccttaagcagcacctcttagcaggtacctgg
aaagtctgcagcactagttgtgcagacagggatgtcctgaagaaagctattgatgaagtg
acctcttggataactgcagcaaaagaagaagatactatgattctgcaggatctgaatggc
tatcatatgcttgaagttcagctggttctgaggcaggctcttgaaaatgtttggacagag
cctcttggagacaagaaggtaatggtgaaaaaagtgagtccagagcaacgtcagcttctg
gagaactcttcttatgaccactgtcagaaaaagctcattctcctgtctgctcggggcttt
accaacctcttccagatacttgttaaagccaagaagcccctggtgggacacaacatgctt
atggaccttatgcatcttcacgacaagttctacaggcccctcccagaaagctatgaggag
tttaaaaggaacattcacaacctgtttcctgtcatcatagacaccaagactgtaacaaaa
tccgtgcagaagaaatgtctgtttcctcgagtatctagtcttttggaggtgtatgcagtt
ttgtgcagcagcaacctaaatcccaaagatccaccgtgccctgttatagctcttgcaagt
ggctgctcaagatacgctgagaagaaatctcctcatgaggcaggctatgatgcatttctc
tgtggttcagttcttctgatgtcagctcatttgctactgtgcagatccacagatggtgca
gtggacactgagccttctttctcgcagtatctcaccgtgttagctgagcacgtgaacaaa
gtgaatttcatccgaggtggtgtttcaagcattaatttttctggggaagatgctccttgc
cgtcatccccctgccttggttgttcatgtccgaggctggccagtgctgacagagagacag
atttaccaagagtttaaagctcgctgtcgcttcgatgttagacggctttcaaagaaccag
ttcattctgctcaccaataaacacaagcatgtcaggctcgtcctgcgggattacaggcac
caccctcacctgcaggtctccgtctatcgccactggaggcactcgccgagcgtgaactgc
ctgctgcaaatctctggtattgtggcactgtggtctctcttggcctttgcacttggagga
gctcgtagctgttga
DBGET
integrated database retrieval system
