Sturnus vulgaris (common starling): 106854478
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Entry
106854478 CDS
T08833
Symbol
TOPBP1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106854478 (TOPBP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
svg03032
]
106854478 (TOPBP1)
03400 DNA repair and recombination proteins [BR:
svg03400
]
106854478 (TOPBP1)
DNA replication proteins [BR:
svg03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
106854478 (TOPBP1)
DNA repair and recombination proteins [BR:
svg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
106854478 (TOPBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
106854478
NCBI-ProteinID:
XP_014733913
LinkDB
All DBs
Position
Unknown
AA seq
1519 aa
AA seq
DB search
MRNSKEPFFVKFIKSSESSQYFSKALESIKEFQSEEHLQILEEETVLNIKENDKSLYICD
PFRGMGFNHLQKLGCRIVGPQVVLYCMQSQRCVPRAEYPVYNMTMADVTVSCTSLEKDVR
EEVHKYVQMMGGCVYRDLNVSVTHLIAGEVGSKKYLVAASLKKPILLPSWVKALWDKSQQ
GIMRYTDVNMEDYACPVFLGCTICVTGLSSSDRKEVQRLTAEHGGQYTGQLKMNECTHLI
VQEPKGQKYECAKKWNVHCVSVQWFSDSIKKGFCQDETMYKIETGSKLSSAPSTSTPTND
TSKPPTHTLSDVSHISNINLSGVNETACSSAMSSRLEPLSDELENLDISSFQAPEDLLDG
CRIYLSGFSGRKLEKMRKLINCGGGVRFNQINEDVTHVIVGENNDELKDFLDKTAHRPHI
VTAKWLLESFGKGSLCPVEHYIPLNYQLLENPILEPGTKSIFPKKKSLLKKDTGNIVKHQ
KAAEDDFLSQYVNNCSTTDEVEKLTFRTFSDVTNSTAQGENLPSVCNGSLAESSPLAEGG
LFFRKSFLLLGFGEEDESCIADIIKENAGEVLPLQSRTIADYAVVPLLGCTVKATVGDVV
TNTWLITCVEQQALLDLRSNPLFTPVLVMEGATPLEDCVLSFSQFTGAERDSLVYLAGLL
GARVQEFFVRKASAKKGMFASTHLVVREPNGSKYEAAKKWNLPAVTVAWLLQSARTGKRA
DESKFLVENAEAEDTESFITQLSKTPATVKSPDSELPTHLLEAGKKGAVTPLDIRRFQSK
AFQAVISHHTGKTTPVAQGGPLQKEPSLSLDTPSKFLSKDKLFKPSFDVKDALEALETPK
GPEQRTRKPSTPLSEVIGRNLKVALASSTMHAAALTASPQLAAAQPEVEEEPKPLADAVI
YVSKKLSKRQRELNAVAASLGADYRWCFDETVTHFIYKGGQNDNNKEYKSVKERGIHIVS
EHWLLESARECKRLPESLFPHTYNPKMSLDISAVQDIRLSSSSSKPLSTGKPADENEIIP
VYEDDAEDDVTTDEIKKTVNVGEEQIAASESKGVLTQALEMRENFQRQLQELMSATSLVK
PQGQRGSLSRSSFDGSPATPDSARSVRNGRSRVLEALRQSRQALADVNTEPSQSEQIIWD
DPTAREERARLVSNLQWPNSPSQYLEQGQSNTGKNVDESALRGSVPDAEMAGIAVPEAED
GDVIESLKNPICRDPETPVKDNLIPTPQAPSIAFPLAKPPVAPEPKEKVVTEDEKADEEA
EKLRKFQLSSLNPQERIDYCHLIEELGGIVLEKQYFDPSCTHIVVGHPLRNEKFLASMAA
GKWVLHRSYLEACRGAGCFVQEEDYEWGSNSVLNVLSGINVNQKKLALAAMRWRKKIHKG
RQEMGIVEGAFSGWKVILNVDQTKEAGFRRLLQSGGAKVFTGHSASLFKEATHLFADFGK
LKPDDSRVNVAEAAAQGVNCLKPEYIADYLIQDPPPPMESYCLLEAESCLQNNSDLGTGL
SQKRKALGEMSRVKRSRIH
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgagaaatagcaaggagccgttttttgtgaagttcataaagtcttccgagagttcgcag
tatttttctaaagcacttgagtctataaaagaattccagtcagaagaacatctccagatc
cttgaagaagaaacagtactcaatataaaagaaaatgataagtcactttacatttgtgat
cctttcagaggcatgggtttcaatcatctccaaaagcttggctgtaggattgttggacct
caggtggttctgtactgcatgcagtcgcagcggtgtgtcccgagagccgagtatcccgtg
tacaacatgaccatggccgacgtgacagtgtcctgtaccagcctggagaaggacgtgagg
gaagaagttcataaatatgtgcaaatgatgggtggatgtgtatacagagacctcaacgta
tcagtaactcatcttatagctggagaagttggcagcaagaaatacttggtagctgcttcc
ctgaagaaacctattttacttccctcttgggttaaggcattgtgggataagtctcagcaa
ggcataatgaggtacactgatgttaacatggaagactatgcttgtcctgtgttccttggc
tgcacgatttgtgtcactggcttaagcagctcggacaggaaagaagtgcagcgcctcact
gctgagcacggtgggcagtacacggggcagctcaagatgaatgagtgcactcacctcata
gttcaagagccaaaaggtcagaagtatgaatgtgccaaaaagtggaatgtgcactgtgtg
tctgtgcagtggttttctgacagcatcaagaaaggcttctgtcaggatgagacaatgtat
aaaatagagactggatcaaaacttagtagtgcacccagtacatcaacacctacaaatgac
accagcaagcctcctactcatactctttcggacgtcagccacatttccaatatcaatttg
agtggtgttaatgaaactgcatgtagttcagctatgagcagcagactggaacctctttct
gatgagctggaaaacttggacataagttcttttcaagcccctgaagatttgttagatggg
tgtcgaatctatctctctggcttcagtggcaggaagttggaaaagatgagaaagcttatt
aattgtggtggtggcgttcgatttaatcaaattaatgaagatgttactcatgtcattgtg
ggggaaaataatgatgagctgaaagactttttggacaagacagctcacaggcctcatata
gtgacagcaaaatggttgctggagtcatttggtaaaggttctctatgtccagtggagcac
tatatccctctaaattaccagctgttagagaatccaattttagaacctggaacgaagtca
atttttcccaaaaaaaagagtctcttgaagaaagacactgggaacattgtaaagcaccag
aaagctgctgaagatgacttcctctctcaatatgtaaataactgttctacaacagatgaa
gttgaaaaattaacattcagaaccttcagtgatgttactaactcgactgcccaaggagag
aatctaccttctgtctgtaatggatctttggcagagtcttctccactggctgagggaggc
ttatttttcaggaagagctttcttcttctgggttttggtgaagaggatgagtcctgcatt
gcagacattataaaggaaaatgctggggaagttctgccactgcaaagcagaaccattgca
gactacgctgtggtacctttattaggatgcaccgtgaaggcaactgttggtgatgttgtc
acaaatacatggctgataacatgtgtggaacagcaggcccttttagatctccgatccaat
ccacttttcaccccagtcctggtaatggaaggagctacccctctggaagattgtgttctt
tcttttagccagttcactggtgcagagagagactcccttgtttatctggcaggactgctg
ggagccagagtccaagaattctttgtgcggaaagccagtgccaaaaaaggaatgtttgcc
agcacccatcttgtggtgagagaaccaaatggctccaagtatgaagctgcaaagaagtgg
aatttgccagcagtcactgtagcttggcttttgcagtctgcaaggacaggaaagagggct
gatgaaagcaagttcttggttgaaaatgcagaggctgaagatacagagagtttcattact
cagcttagcaagacaccagcaactgttaaatctcctgattcagaactgcctactcatctc
cttgaagctggaaaaaaaggagctgtgaccccccttgatatcagaaggttccagagtaaa
gctttccaagctgtaatctctcatcatactgggaagacgacccctgttgcacaaggggga
ccactccagaaagaaccatctttaagtcttgacacaccatcaaagtttctttccaaagac
aagttgttcaagccttcttttgatgtaaaggatgctctggaagctctggaaactcctaaa
ggtcctgaacaaagaaccaggaaaccgagcacacctctctctgaagtcatcggcagaaac
ttgaaagtggcactggcaagcagcacaatgcacgcagcagctcttactgccagccctcaa
ttggctgctgcacagccagaggtggaagaagagcccaagcctctagctgatgctgttata
tatgttagcaaaaaacttagtaagaggcaaagggagctgaatgcagtagcggcttctctt
ggagcagactacagatggtgctttgatgaaacagtaacacacttcatctataagggagga
cagaatgataacaataaggagtacaaatctgttaaagaacggggtatacatattgtttca
gaacattggcttttagagagtgcccgagaatgtaaacggcttcctgaatctctctttcct
cacacttacaatcccaaaatgagcttggacatcagtgcagtgcaagacatcaggctctcc
tcctcctccagtaaacctctttcaactggaaaaccagcagatgaaaatgagattattcca
gtgtatgaagatgatgccgaagatgatgtaactactgacgaaataaagaaaacagtcaat
gtaggggaagaacaaattgcagcaagtgaatccaaaggagttttaacccaagcactagaa
atgagggagaacttccaaaggcagctgcaggagctcatgtctgccacatcactagtgaaa
ccacaagggcaaagaggatcactttccagaagcagctttgatggttctccagccactcct
gatagcgcacggtctgtgcgaaatggccgcagtagggtcttggaagctctaaggcagtcc
cgccaggcactggcagatgtaaacacagagccatcccagagtgagcagatcatttgggat
gatcctactgcgagggaagagagagcaagacttgtcagcaaccttcagtggcctaatagt
ccttctcagtaccttgagcaaggtcagagtaacaccggtaaaaatgtggatgagtctgcc
ctcagaggatctgtacctgatgcagagatggctggtatagctgttcctgaggctgaggat
ggagatgtgattgaaagtttaaagaatcccatatgtagagatcctgaaacgccagttaag
gataacttgatccctactccacaggcccccagcattgctttcccgcttgctaagcctcct
gtggcaccagagcccaaagaaaaggttgttactgaagatgagaaggctgatgaagaagca
gaaaagctccgtaaatttcagctgtcttctcttaatcctcaagaaagaattgattactgc
catctgattgaggaattaggtggaatagtacttgagaaacagtactttgatccgagttgc
acacacattgttgtgggacatcctcttcggaatgaaaaattcttggcttcgatggcagct
ggaaagtgggtgcttcatcgttcctacctggaggcgtgtagaggagctggctgctttgtt
caggaagaagactatgagtggggaagtaactctgtacttaatgttttatctggaatcaat
gtaaaccagaagaaactagcactggcagccatgaggtggaggaaaaaaattcacaaaggg
agacaagaaatgggtattgttgagggagctttcagtggttggaaagtgatcctgaacgtt
gatcaaaccaaggaagcagggttcaggcgtcttcttcagtcaggaggagcaaaagtgttt
actggccattctgcatctctctttaaagaagcaactcacctctttgctgactttggtaag
ctgaagccagatgactccagggttaacgtggcagaggcggcagcccagggagtgaactgc
ctcaaacctgagtacatcgctgactatctcatccaggatccacctccccctatggagtct
tactgcctgctagaagctgagtcttgccttcagaataactcagatcttggaactggatta
tcccagaaaagaaaagcactgggagaaatgagcagagtcaagcgatccagaatacactaa
DBGET
integrated database retrieval system
