Sturnus vulgaris (common starling): 106854671
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Entry
106854671 CDS
T08833
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106854671 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svg03019
]
106854671 (PATL1)
Messenger RNA biogenesis [BR:
svg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106854671 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
106854671 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
106854671
NCBI-ProteinID:
XP_014734203
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MQAVHTRDPPQQPGGLNSSIWDSSAVLRRIRGPLLTQEMPSVSVLDYALPQRPPQARDEE
RDPSERALPRRSSSPIIGSPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYP
APYGERMSPNQLCNVPNSSLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSG
LVGSPLPSVNPKLLQGRVGQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQP
QMFRPDTTHLHPQHRRLLHQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLML
QREKDWVSKIQMMQLQSTDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQV
AKLEHTYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTI
EKTYSLLLDVEDYERRYLLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQ
IMCIRKGKRLVARILPFLAPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYH
LPLGTVTSLVQQLTNLPQSAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTEL
MQDNQWTELMLMATRELLRIPQAALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQG
IR
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccgtgcacaccagggatcccccacagcagcctggagggctgaattccagcatc
tgggacagctcagctgtgctgcggcgcatccgggggccgctcctcactcaggagatgccg
tcagtgtccgtgctggattatgctctgccccagaggcctccacaggctcgggatgaggag
cgggatccatcggagcgggcgctgccccggcgttcctcgtcccccatcattgggagcccc
ccggtccgggctgttcccatcggcaccccccccaaacaggccgccatcccaaacttcaac
cagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcagcagcgttatccc
gctccctatggagagaggatgtcccccaaccagctctgcaatgttccgaattcctccctc
ctgggccacccgttcccccacagcgtctctcccgttctcacacacctgcagagagcccag
ctgcttggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtgtcaggg
ctggtggggagcccgctgccctctgtgaatcccaagctgctccagggcagagttgggcag
atgatgtccccggccggagggttccgtgccttttttggggctccccccgccccacccccc
tcgcagctgccgcaccctccaggccccggatcccacctgcagaacctgaggccgcagccc
cagatgttccggccggacacgacccatttgcacccccagcaccgccggcttctgcaccag
cggcagcagcagaaccggaaccagcaccggagcctcaacggctccgggggggaccgaggg
ggccaccggagcagccatcaggagcagatccgtaaggatccctacgccaacctcatgctg
cagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagcactgatccc
tacctggatgattattattatcagaattacttccagaagctggagaagttggcagccgcc
gaggaagtgcatggtgacggtcccaagaaggagcgcactaaactcatcacccctcaggtg
gcgaagctggaacacacctacaagccagtgcagtttgagggctcgctgggaaaactcacc
gtctccagtgtcaacaacccccggaagatgattgatgccgtggtgacatcccgcagcgag
gatgatgagactaaggagaagcaggtccgggataagaggcgacagaccctcgttaccatc
gagaagacgtatagcctcctcctggatgtggaggactatgagcgccgctacctcctgagc
ctggaaggggagcggccagccctgatgggagagaggaaacagaagatctgtgacatgtat
gacaatctgagggggaaggcacctgggcaggacaggccgagcgatgaccacttcatgcag
atcatgtgcatccggaaaggaaagcgccttgtggcccggatccttcccttcctggctcca
gagcaagcggctgacgtgctcatggccacagccaggaacctgcccttcctcatcaagaag
gatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccacgttctctatcac
cttcccttgggaacagtcaccagccttgtgcagcagctcacaaacctacctcagagcgcc
gccgctcccaccaacctgcacctcactgctgtgctccaaaacaagttcggtctgtccctg
ctgtacctggtcctgagccgaggggaggaattgcagagctcagacacgaacacagagctg
atgcaggacaaccaatggacggagctgatgctgatggcgacccgggagctcctgcgaatt
cctcaggcagccttggcaaagcccgtgtccatcccctccaacttgatctccctcttctct
cgctatgttgaccagcagaagctgaacctgctggagacaaaattgcacttagtgcagggg
atccggtag
DBGET
integrated database retrieval system
