Sturnus vulgaris (common starling): 106857179
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Entry
106857179 CDS
T08833
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
svg
Sturnus vulgaris (common starling)
Pathway
svg03013
Nucleocytoplasmic transport
svg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
svg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106857179 (UPF2)
03015 mRNA surveillance pathway
106857179 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svg03019
]
106857179 (UPF2)
Messenger RNA biogenesis [BR:
svg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106857179 (UPF2)
mRNA cycle factors
P-body specific factors
106857179 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
106857179
NCBI-ProteinID:
XP_014738587
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MPAERKKSANMEEKESQLNNKEFSERRPVSTREKPKEDVKVGMKRETLKVPEDKKKKMEE
DKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQLKE
KEEAHQLHQEAWERHQARKELRSKNQNAPESRPEENFFSRLDSSLKKNTAFVKKLKTITE
QQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQA
WKKHFEARKEEKTSNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRESHT
HVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPPSEIISPEKQQPFQNLLKEYFTSL
TKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDEN
MPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAILF
KDNEKYSQSKDSSKDESRDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAEDL
TKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRRK
LVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIETK
NKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLR
TSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYKDL
SKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGI
HVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNP
DGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDVWT
KDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKESI
TEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTDSN
KENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIP
LHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQ
AEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNADL
IFKTGGRRR
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagtcagcaaatatggaagaaaaagaatctcagttaaataac
aaagaatttagtgaaaggcgaccagtgagcaccagggaaaagccaaaagaagatgtgaag
gttggcatgaagagagagactttaaaggttcctgaagataaaaagaaaaaaatggaagag
gataaaagaaagaaggaagacaaggagaggaagaaaaaagaagaggataaagtaaaggca
gaagaggagcagaagaagaaagaagaagaagaaaaaaagaaacttgaagaagaggagaag
aagaaacaggaggaggaagagaaaaagaaacaagaagaagaagctgctcaactgaaggag
aaagaggaagcacatcagctccatcaggaggcttgggagcggcaccaggcaagaaaagag
ctccgcagcaaaaaccagaacgcaccggagagtcgtccggaggaaaacttcttcagcaga
ctggactccagtctgaagaagaacacagcttttgttaagaagctaaaaaccattacagag
caacaaagggactccttgtcccatgactttaatagcctgaatttaagcaaatacattgca
gaagcagtagcttctattgtggaggcaaaactgaaaatatcagacgtgaactgcgctgtg
cacttgtgttccctctttcaccagcgatatgctgattttgctccttcattacttcaggct
tggaagaaacattttgaagcaaggaaagaagagaagacttccaacattaccaagttaaga
actgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaaggaaggt
ttgtctttaatctatgagcaacttaaaaatattattaacgctgatcgagagtcccacact
catgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggtttggta
ccaaggaaagtaaaaactgttgcagagaagtttaacttgagctttcctcctagtgagata
attagcccagagaaacaacagcccttccagaatttgttgaaggaatactttacatctttg
accaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaacagacgg
attctccactccaagggagagctgagtgaagatcgacacaagcaatatgaggaatttgca
atgtcatatcagaagctgttggcaaattctcagtctctggctgatcttttggatgagaac
atgcctgacctcccccaagagaagccaacgcctgaggaacatggacctggtattgatatt
ttcacaccaggaaaacctggagaatatgacctggaggggggtatctgggaagatgaagat
gctagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaattttattt
aaagataatgaaaaatattcccagagcaaggattccagcaaagatgaatcaagagattca
aaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggagctggag
aacctggatattaatgatgatgcactggagttggactgtggagatgaggcagaagatctt
acaaagaagcttcttgatgagcaagaacaagaggatgaagaagccagtactggatctcat
ttaaaactcatagtagatgcttttcttcagcagcttccaaattgtgtcaacagagacctc
atagacaaggcagcgatggatttttgcatgaatatgaatacaaaagccaacagaagaaaa
ctggtacgagcacttttcatagttcctagacaaagattggatttgctaccattttatgca
agactggttgccacattgcatccctgtatgtctgatgtagcagaggatctctgttccatg
ctgaaaggggatttcagattccatgtaagaaaaaaggaccagatcaacattgaaacaaag
aataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaagaacgat
actctgcactgtttaaagatgcttctgtcagacttctctcatcaccatattgaaatggca
tgcaccttgctggaaacctgtggaagattcctcttcagatcaccagaatctcacttaaga
accagcgttcttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgatgcacgc
tatgttacaatggtagaaaatgcctattactactgtaatccccctccagctgaaaaaact
gtgaagaaaaaacgtcctcctttgcaggaatatatccgtaagcttctttacaaggatctc
tccaaggtcaccacagagaaggtcctgagacagatgcgcaagctgccttggcaggatgca
gaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatataatagt
attcactgtgtagccaacctcctagcagggttggtcctttaccaggaagatgtgggaatt
catgttgtggatggagtgctagaggatattcgactaggaatggaggttaatcaaccaaag
ttcaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattatcgaatg
gtggagtcagctgtaatatttagaactctgtattctttcacctcgtttggtgtgaaccct
gatggcagtcctagtccactggaccctccagaacaccttttcagaatcagacttgtctgt
actatcctcgatacctgtgggcaatattttgacagaggatccagcaagcgaaaacttgat
tgcttcctcgtatattttcagcgctatgtgtggtggaaaaaaagtctggatgtttggaca
aaagaccacccttttcctatagacatagattatatgatcagtgatacactggaactgctg
agaccaaagataaagctctgcaattctctggaagaagctgtcagacaggtgcaagacttg
gaacgggaattcttaataaaattgggaattgtgaatgacaaagattccaaggagtccatt
acagaaggagagaatctggaagaggatgaagaagaggaagaaggtggagcagagacagag
gagcaatctggaaatgaaagtgaagtaaatgagccagaagaagaggagggctctgacaat
gaggaagaagaaggtgaagaagaggaggaagaaaacaccgattatcttacagactccaat
aaggaaaatgaaacggatgaggagaatacagaagtaatgattaaaggaggaggactgaag
catgtcccttgtgcagaggatgaggacttcattcaggccttagataaaatgatgctggaa
aatcttcagcaacggagtggagaatctgttaaagtgcatcagttggatgttgctattcct
ctgcatctcaaaagtcagctgaaaaagggccccccacttggaggtggggaaggagagtca
gagtctggggacacgatgccatttgtcatgttaacaagaaaaggcaacaaacagcagttt
aagatcctaaatgtgccgatgtcttcccaacttgctgcaaaccattggaaccagcagcaa
gcggaacaggaggagagaatgaggatgaaaaaactcactttggatatcaatgaacggcag
gaacaagaggactatcaggaaatgttgcagtctctggcacagcgtccagctccagcaaat
accaatcgtgagcggcggcctcgttaccagcatccgaagggagcacctaatgcagatcta
atctttaaaaccggtgggaggagacgctga
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